Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006704

Physical Location & Seq

Genomic Coordinates Reverse (-)

41494082 .. 41494753

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCACTCATAATGATCATCATATTAGTCGCTTTCAATGGCAATCAGCGGTCTTGAATAATCAACATGGTCACGTGGTTGTCTACCTCAACATTGTAGTTCCAACTGAATCTGCTTCTTCATCTTCTTCTTCTACTACTGCTCCGCCCTCTGACAATCTTGCTTTCATCGTTCCGGTACTCTTAACTTTCGTTCAGATCAAGTTCCCAGGGATCAACATGTGGTCTTCGCTGTTCGAAACGCACCATACAACCGCCGTGGCGGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTACCCGCTTACACTGTCAACTTTCGAGTTGTGAGGATGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGCGCTTCTGCTTCCCGACTCTTGGGAGCATGTACCATATTACATCTTGTTCATGTCATATTGGGTGAGCCGAGGGTTTGGGTTTCTCCGAATGATGTATGGATTGGTTTACCGACGACTTGTGGAGGAACTTCTTCAAAAGTTATGGTTATTCATCCATTACCGTCAACGAGTCCCAAGAACTGGTGAGCTCTTGCCGTTTACAGTTGTGAATACACATGATCGCACGTCGATCCGTGGGCTCTTGCCATTGACGGTCATGGATATGCATGATCGCATATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS8

Protein Analysis

223

Amino Acids

25.64

Weight (kDa)

9.34

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39170
fragaria_vesca	FvH4_7g18740 FvH4_7g18740 FvH4_7g18740
malus_domestica	MD01G1102900.v1.1
prunus_persica	Prupe.2G208500_v2.0.a1
pyrus_communis	pycom01g12940 pycom07g16340
rosa_chinensis	RchiOBHm_Chr1g0362511 RchiOBHm_Chr1g0384391
rosa_laevigata	RLG00000027640
rosa_multiflora	Rmu_sc0005725.1_g000003 Rmu_sc0015670.1_g000002 Rmu_sc0016737.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294000
rosa_rugosa	Rorug01G0298700
rosa_samantha	Rh1AG308000 Rh1AG472700 Rh1BG271100 Rh1BG430500 Rh1CG288900 Rh1CG443500 Rh1DG301400 Rh1DG463100
rosa_wichuraiana	Rw1G027330 Rw1G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	389
AciI	CCGC	5 cut(s)	50, 146, 255, 263, 321
AclWI	GGATC	2 cut(s)	221, 613
AcoI	YGGCCR	2 cut(s)	3, 264
AcvI	CACGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	180, 420
AfiI	CCNNNNNNNGG	2 cut(s)	408, 569
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	38, 58, 524
AjiI	CACGTC	1 cut(s)	615
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	276, 577
AluI	AGCT	2 cut(s)	276, 577
Alw21I	GWGCWC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	221, 613
AoxI	GGCC	3 cut(s)	3, 264, 303
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	298, 391
AsuHPI	GGTGA	2 cut(s)	463, 584
AsuII	TTCGAA	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	579, 630
BbrPI	CACGTG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	579
BceAI	ACGGC	2 cut(s)	242, 568
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	5 cut(s)	208, 209, 258, 457, 622
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 569
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	5 cut(s)	208, 209, 258, 457, 622
BseGI	GGATG	2 cut(s)	357, 540
BseLI	CCNNNNNNNGG	2 cut(s)	408, 569
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	5, 266, 305
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	408, 569
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	3 cut(s)	5, 266, 305
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	579, 630
Bsp143I	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
BspACI	CCGC	5 cut(s)	50, 146, 255, 263, 321
BspANI	GGCC	3 cut(s)	5, 266, 305
BspFNI	CGCG	1 cut(s)	389
BspPI	GGATC	2 cut(s)	221, 613
BspT104I	TTCGAA	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	5 cut(s)	208, 209, 258, 457, 622
BssMI	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	331, 551, 592, 643
BstBAI	YACGTR	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	274, 278, 294, 387
BstDSI	CCRYGG	2 cut(s)	258, 622
BstF5I	GGATG	2 cut(s)	357, 540
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	298, 391
BstKTI	GATC	7 cut(s)	19, 201, 216, 369, 610, 621, 661
BstMBI	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 269, 302
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	2 cut(s)	223, 419
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	5, 266, 305
BtgI	CCRYGG	2 cut(s)	258, 622
BtrI	CACGTC	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	357, 540
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	327, 380
Cac8I	GCNNGC	4 cut(s)	274, 278, 294, 387
CfoI	GCGC	2 cut(s)	298, 391
Csp6I	GTAC	2 cut(s)	179, 419
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	8 cut(s)	68, 220, 307, 416, 439, 605, 646, 656
CviJI	RGCY	8 cut(s)	5, 266, 276, 292, 305, 456, 577, 628
CviKI_1	RGCY	8 cut(s)	5, 266, 276, 292, 305, 456, 577, 628
CviQI	GTAC	2 cut(s)	179, 419
DpnI	GATC	7 cut(s)	18, 200, 215, 368, 609, 620, 660
DpnII	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
EaeI	YGGCCR	2 cut(s)	3, 264
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	579, 630
Eco53kI	GAGCTC	1 cut(s)	577
Eco72I	CACGTG	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	657
EcoT38I	GRGCYC	2 cut(s)	579, 630
FaeI	CATG	8 cut(s)	71, 223, 310, 419, 442, 608, 649, 659
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	8 cut(s)	67, 219, 306, 415, 438, 604, 645, 655
FauI	CCCGC	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	2 cut(s)	364, 527
FriOI	GRGCYC	2 cut(s)	579, 630
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	2 cut(s)	297, 390
GluI	GCNGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	5, 266, 305
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	2 cut(s)	298, 391
Hin1II	CATG	8 cut(s)	71, 223, 310, 419, 442, 608, 649, 659
Hin6I	GCGC	2 cut(s)	296, 389
HinP1I	GCGC	2 cut(s)	296, 389
HincII	GTYRAC	2 cut(s)	334, 554
HindII	GTYRAC	2 cut(s)	334, 554
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	3 cut(s)	110, 404, 558
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	463, 584
Hpy166II	GTNNAC	5 cut(s)	85, 334, 496, 554, 588
Hpy188I	TCNGA	3 cut(s)	154, 198, 476
Hpy188III	TCNNGA	2 cut(s)	55, 401
Hpy8I	GTNNAC	5 cut(s)	85, 334, 496, 554, 588
Hpy99I	CGWCG	2 cut(s)	504, 619
HpyCH4III	ACNGT	4 cut(s)	331, 551, 592, 643
HpyCH4IV	ACGT	2 cut(s)	75, 614
HpyCH4V	TGCA	3 cut(s)	272, 310, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 269, 302
HpySE526I	ACGT	2 cut(s)	75, 614
Hsp92II	CATG	8 cut(s)	71, 223, 310, 419, 442, 608, 649, 659
HspAI	GCGC	2 cut(s)	296, 389
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
LmnI	GCTCC	2 cut(s)	148, 412
LpnPI	CCDG	6 cut(s)	189, 195, 222, 278, 345, 555
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	75, 614
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	7 cut(s)	18, 200, 215, 368, 609, 620, 660
MboI	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
MboII	GAAGA	6 cut(s)	111, 117, 120, 123, 219, 512
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	579, 630
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	372
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	398, 567
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	98, 160, 295, 342, 452, 505
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	650
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	263, 269, 302
NdeII	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
NlaIII	CATG	8 cut(s)	71, 223, 310, 419, 442, 608, 649, 659
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	2 cut(s)	223, 419
NspV	TTCGAA	1 cut(s)	237
PasI	CCCWGGG	1 cut(s)	209
PciI	ACATGT	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	398, 566
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	2 cut(s)	398, 566
Ppu21I	YACGTR	1 cut(s)	76
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	208
PspCI	CACGTG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	180, 420
RsaNI	GTAC	2 cut(s)	179, 419
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	7 cut(s)	16, 198, 213, 366, 607, 618, 658
SchI	GAGTC	2 cut(s)	398, 567
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	579, 630
SetI	ASST	6 cut(s)	78, 90, 278, 364, 579, 617
SfuI	TTCGAA	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	650
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	5 cut(s)	50, 146, 255, 263, 321
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	4 cut(s)	331, 551, 592, 643
TaiI	ACGT	2 cut(s)	78, 617
TaqI	TCGA	3 cut(s)	237, 340, 617
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	334, 387
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	111, 157, 427, 529
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	334, 387
Van91I	CCANNNNNTGG	1 cut(s)	569
XceI	RCATGY	2 cut(s)	223, 419
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.