Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016737.1

Orthogroup ID

OG0006704

Physical Location & Seq

Genomic Coordinates Forward (+)

32250 .. 32822

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016737.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgaaagaatgtggattccccgttgctgatgagatgattagagacatacagaaatctcttgtactttatgtctacaaaacaacaaaaaagagggctaatcgacaaccagggatcagcttttcagctgggaagaggaagttcttggaaaccagccagttggggacttggggtagttcaccaagtgatgcccagcaggatagtggaggcagttatttttccactgtattaaaatctgcaagacaaaaggccagcaatttgaagtggccgcaacttgaccctaaagaactaacagaggtcgcctcctactgtaacccaccagtatcagttgctactgcaagcactagttcgtctctgccagatacagaagctgatgagctgcccttgtcgagccatattacagatgaaccgcaagaagaacaagttgatgagagcttgtcgacccataatttgtcttcattgtcagaaaactttgatgagttcaaggctgataaagaagttaaactacgagagtggttggaagggaccgacaatctagttaatcccggacgagcaagtgatgcagaaagatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS8

Protein Analysis

190

Amino Acids

20.98

Weight (kDa)

4.89

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39170
fragaria_vesca	FvH4_7g18740 FvH4_7g18740 FvH4_7g18740
malus_domestica	MD01G1102900.v1.1
prunus_persica	Prupe.2G208500_v2.0.a1
pyrus_communis	pycom01g12940 pycom07g16340
rosa_chinensis	RchiOBHm_Chr1g0362511 RchiOBHm_Chr1g0384391
rosa_laevigata	RLG00000027640
rosa_multiflora	Rmu_sc0005725.1_g000003 Rmu_sc0015670.1_g000002 Rmu_sc0016737.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294000
rosa_rugosa	Rorug01G0298700
rosa_samantha	Rh1AG308000 Rh1AG472700 Rh1BG271100 Rh1BG430500 Rh1CG288900 Rh1CG443500 Rh1DG301400 Rh1DG463100
rosa_wichuraiana	Rw1G027330 Rw1G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	72, 437
AciI	CCGC	2 cut(s)	266, 407
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	259, 481
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	5 cut(s)	117, 125, 368, 376, 432
AluI	AGCT	5 cut(s)	117, 125, 368, 376, 432
Alw26I	GTCTC	2 cut(s)	36, 354
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	246, 263
ApeKI	GCWGC	1 cut(s)	376
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	36, 354
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	2 cut(s)	342, 533
BglII	AGATCT	1 cut(s)	566
BisI	GCNGC	2 cut(s)	266, 377
BlsI	GCNGC	2 cut(s)	267, 378
Bme1390I	CCNGG	2 cut(s)	108, 543
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	108, 543
BmsI	GCATC	2 cut(s)	175, 547
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	154, 317
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	154, 317
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	2 cut(s)	125, 189
BshFI	GGCC	2 cut(s)	248, 265
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	175, 535
BsmAI	GTCTC	2 cut(s)	36, 354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	175, 535
BsnI	GGCC	2 cut(s)	248, 265
Bsp143I	GATC	2 cut(s)	111, 566
BspACI	CCGC	2 cut(s)	266, 407
BspANI	GGCC	2 cut(s)	248, 265
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	154, 317
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	111, 566
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	223, 308
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	250, 337
BstDEI	CTNAG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	114, 569
BstMAI	GTCTC	2 cut(s)	36, 354
BstMBI	GATC	2 cut(s)	111, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	106, 541
BstV1I	GCAGC	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	248, 265
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	250, 337
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	62
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	113, 568
DpnII	GATC	2 cut(s)	111, 566
DraIII	CACNNNGTG	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	354
FaiI	YATR	4 cut(s)	47, 69, 393, 444
FaqI	GGGAC	2 cut(s)	175, 535
FblI	GTMKAC	2 cut(s)	72, 437
Fnu4HI	GCNGC	2 cut(s)	266, 377
Fsp4HI	GCNGC	2 cut(s)	266, 377
FspBI	CTAG	2 cut(s)	342, 533
GluI	GCNGC	2 cut(s)	266, 377
GsaI	CCCAGC	2 cut(s)	129, 193
HaeIII	GGCC	2 cut(s)	248, 265
HapII	CCGG	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	3 cut(s)	73, 176, 438
Hpy188I	TCNGA	1 cut(s)	463
Hpy8I	GTNNAC	3 cut(s)	73, 176, 438
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	2 cut(s)	223, 308
HpyCH4V	TGCA	3 cut(s)	236, 335, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	111, 566
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	2 cut(s)	175, 547
MaeI	CTAG	2 cut(s)	342, 533
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	2 cut(s)	113, 568
MboI	GATC	2 cut(s)	111, 566
MboII	GAAGA	3 cut(s)	142, 425, 444
MflI	RGATCY	1 cut(s)	566
MluCI	AATT	2 cut(s)	253, 445
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	5 cut(s)	84, 126, 197, 286, 310
MseI	TTAA	3 cut(s)	227, 498, 537
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	108, 543
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	111, 566
NlaIV	GGNNCC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	267, 378
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	2 cut(s)	125, 189
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	227, 498, 537
SatI	GCNGC	2 cut(s)	266, 377
Sau3AI	GATC	2 cut(s)	111, 566
Sau96I	GGNCC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	108, 543
SetI	ASST	6 cut(s)	119, 127, 297, 370, 378, 434
SfaNI	GCATC	2 cut(s)	175, 547
SinI	GGWCC	1 cut(s)	522
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	2 cut(s)	253, 445
SsiI	CCGC	2 cut(s)	266, 407
SspMI	CTAG	2 cut(s)	342, 533
StyD4I	CCNGG	2 cut(s)	106, 541
TaaI	ACNGT	2 cut(s)	223, 308
TaqI	TCGA	3 cut(s)	100, 386, 437
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	253, 445
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	3 cut(s)	227, 498, 537
Tru9I	TTAA	3 cut(s)	227, 498, 537
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	17, 417, 444
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	72, 437
XspI	CTAG	2 cut(s)	342, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.