FvH4_7g18740

BLOC-1-related complex sub-unit 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006704
Physical Location & Seq
Forward (+)
15562016 .. 15563821
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18740.t2

Sequence Viewer

Length: 792 bp
ATGCATGGATTCTCCACCGTTGACGGCTTTGTGGAGATAACTGAATGCTTAGGAGAGATGATTAAATATGTGGCAAACGAACCCTCAGTAGGGCTTTATTATGTCCAGCAGCACACTCAAAATGCAGTGCCCAATCTCGTTGGTCTGAGAAATGGTGTAGTGAACAAGTCGCGTGAAACAACTTTGCACACTGAAGATTCAGAGGATTCCATAACCATGGTGAGATCGATGAAAGAATGTGGATTCCCTGTTGCTGATGAGATGATTAGGGACATAAAGAAATCTCTTGCGCTTATGTCTACAAAACAACCAAAAAGAGGGCTAATAGACAACCAGGGATCAGCTTTTCAGCTAGGAAGAGCAAGTTCTTGGAAACCAGCCAGTTGGGGTCGTTCTCCAAGTCATGATTGGCAGGATAGTGAAGGCAGCTATTTTTCTACTGTATTAAAATCTGCAAAACAAAAGGCCAGCAATTTGAAGTGGCCGCAAATTGATCCTAAAGAACTAACAGAGGTCTCCTCCTACTCTAACCCACCAGTATCAGTTGCTACTGCAAGCACGAGTTCATCTCTGCCAGATACAGAAGCTGATGAGCTGCCCATATCGAGCCATATTACAGATGAACCACAAGAAGAACAAGTCGACGATAGCTTGTCGTCGCATAATTTGTCTTCATTGTCAGAAAACTTTGATGAGTTCAAGGCTGATAGAGAAGTTAAACTACGTGAGTGGTTGGAAGGGACTGATAGTCCAGATAATCCCATAGGAGCAAGTCATGCAGAAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS8

Protein Analysis

264

Amino Acids

29.05

Weight (kDa)

4.82

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS8 PF10167 5 - 109 6.4e-28 BLOC-1-related complex sub-unit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 299, 642
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 485
AclWI GGATC 2 cut(s) 346, 488
AcoI YGGCCR 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 89, 90, 317
AgsI TTSAA 2 cut(s) 478, 700
AhdI GACNNNNNGTC 1 cut(s) 747
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 6 cut(s) 344, 352, 429, 587, 595, 651
AluI AGCT 6 cut(s) 344, 352, 429, 587, 595, 651
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 2 cut(s) 346, 488
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 465, 482
ApeKI GCWGC 3 cut(s) 109, 426, 595
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 705, 737
BauI CACGAG 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 663
BbvI GCAGC 3 cut(s) 121, 438, 582
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 1 cut(s) 353
BglII AGATCT 1 cut(s) 785
BisI GCNGC 4 cut(s) 110, 427, 485, 596
BlsI GCNGC 4 cut(s) 111, 428, 486, 597
Bme1390I CCNGG 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 747
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 4 cut(s) 503, 535, 553, 585
Bpu10I CCTNAGC 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 725
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 216, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 90, 317
Bse1I ACTGG 2 cut(s) 381, 536
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 216, 334
BseLI CCNNNNNNNGG 3 cut(s) 89, 90, 317
BseMII CTCAG 2 cut(s) 99, 137
BseNI ACTGG 2 cut(s) 381, 536
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 3 cut(s) 121, 438, 582
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 467, 484
BshVI ATCGAT 1 cut(s) 227
BslFI GGGAC 2 cut(s) 284, 754
BslI CCNNNNNNNGG 3 cut(s) 89, 90, 317
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 2 cut(s) 284, 754
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 2 cut(s) 467, 484
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 4 cut(s) 224, 338, 493, 785
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 485
BspANI GGCC 2 cut(s) 467, 484
BspCNI CTCAG 2 cut(s) 98, 138
BspDI ATCGAT 1 cut(s) 227
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 403
BspPI GGATC 2 cut(s) 346, 488
BspQI GCTCTTC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 520
BsrI ACTGG 2 cut(s) 381, 536
BssECI CCNNGG 2 cut(s) 216, 334
BssMI GATC 4 cut(s) 224, 338, 493, 785
BssSI CACGAG 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 19, 442
Bst6I CTCTTC 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 469, 556
BstDEI CTNAG 4 cut(s) 49, 85, 146, 789
BstDSI CCRYGG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 227, 341, 496, 788
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 4 cut(s) 224, 338, 493, 785
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 121, 438, 582
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 785
BstXI CCANNNNNNTGG 2 cut(s) 217, 384
BstYI RGATCY 1 cut(s) 785
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 2 cut(s) 467, 484
BsuTUI ATCGAT 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 189
Cac8I GCNNGC 2 cut(s) 469, 556
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 292
ClaI ATCGAT 1 cut(s) 227
CviAII CATG 4 cut(s) 5, 217, 404, 776
DdeI CTNAG 4 cut(s) 49, 85, 146, 789
DpnI GATC 4 cut(s) 226, 340, 495, 787
DpnII GATC 4 cut(s) 224, 338, 493, 785
DriI GACNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 352
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 8, 220, 407, 779
FaqI GGGAC 2 cut(s) 284, 754
FatI CATG 4 cut(s) 4, 216, 403, 775
FblI GTMKAC 2 cut(s) 299, 642
Fnu4HI GCNGC 4 cut(s) 110, 427, 485, 596
Fsp4HI GCNGC 4 cut(s) 110, 427, 485, 596
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 291
GluI GCNGC 4 cut(s) 110, 427, 485, 596
HaeIII GGCC 2 cut(s) 467, 484
HhaI GCGC 1 cut(s) 292
Hin1II CATG 4 cut(s) 8, 220, 407, 779
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 2 cut(s) 22, 643
HindII GTYRAC 2 cut(s) 22, 643
HinfI GANTC 4 cut(s) 9, 197, 206, 243
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 4 cut(s) 22, 163, 300, 643
Hpy188I TCNGA 3 cut(s) 147, 202, 682
Hpy188III TCNNGA 2 cut(s) 404, 752
Hpy8I GTNNAC 4 cut(s) 22, 163, 300, 643
Hpy99I CGWCG 2 cut(s) 647, 661
HpyAV CCTTC 2 cut(s) 416, 731
HpyCH4III ACNGT 2 cut(s) 19, 442
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 6 cut(s) 4, 125, 187, 455, 554, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpyF3I CTNAG 4 cut(s) 49, 85, 146, 789
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 4 cut(s) 8, 220, 407, 779
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 224, 338, 493, 785
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 767
Lsp1109I GCAGC 3 cut(s) 121, 438, 582
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 724
MalI GATC 4 cut(s) 226, 340, 495, 787
MboI GATC 4 cut(s) 224, 338, 493, 785
MboII GAAGA 4 cut(s) 206, 369, 644, 663
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 472, 489, 664
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 5 cut(s) 94, 196, 311, 505, 529
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 63, 446, 717
MslI CAYNNNNRTG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 776
NcoI CCATGG 1 cut(s) 216
NdeII GATC 4 cut(s) 224, 338, 493, 785
NlaIII CATG 4 cut(s) 8, 220, 407, 779
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 352
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 9, 197, 206, 243
PkrI GCNGC 4 cut(s) 111, 428, 486, 597
Ppu21I YACGTR 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 785
RseI CAYNNNNRTG 1 cut(s) 215
SalI GTCGAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 63, 446, 717
SatI GCNGC 4 cut(s) 110, 427, 485, 596
Sau3AI GATC 4 cut(s) 224, 338, 493, 785
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 132
SetI ASST 8 cut(s) 346, 354, 431, 516, 589, 597, 653, 727
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 3 cut(s) 472, 489, 664
SsiI CCGC 1 cut(s) 485
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 19, 442
TaiI ACGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 227, 605, 642
TasI AATT 3 cut(s) 472, 489, 664
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 4 cut(s) 9, 197, 206, 243
Tru1I TTAA 3 cut(s) 63, 446, 717
Tru9I TTAA 3 cut(s) 63, 446, 717
TscAI CASTG 2 cut(s) 132, 196
TseI GCWGC 3 cut(s) 109, 426, 595
TspDTI ATGAA 4 cut(s) 245, 555, 636, 663
TspRI CASTG 2 cut(s) 132, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XmiI GTMKAC 2 cut(s) 299, 642
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.