AT2G39440

Ribonuclease H2, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010189
Physical Location & Seq
Reverse (-)
16467830 .. 16469628
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39440.2

Sequence Viewer

Length: 489 bp
ATGGGAACCATAGACTTTAGAGCTGCTGCAGATGAAAACTCCATTGTGGATCTCAGCAGTCAAGTTCACCAGCTCCCTTGCTGCATTAGATTTGATGGTCCTGTTGAAGTTTCCCACTATTTCAAGCCTAAATCTAGCGATGTTGAAATCGATGGAGTAAAAACGGAAGAAGCTCATTTCAGAGGAAGGAAGTTGCAGGGAGCAACTATCTCACTCCCTAGTGGCTATTCTGGCTTTGTGCTTAGACAAGCGAGTAACTTGAATGCTAATGGAAAGAGAAAAGCTTCTATGCCCACAGAAGATAACCAGTGTTGGGAAGTGAAGGCGAAATTCAATAACCTGACATACTGGAATCACGATAGTCTTCCTTCAAAGGACGATACTTTCTTTCGCTCTTTTCATTGGTTTAGCATTGCAGAAGCGCTGCATAAACCAGTGAAAGTTGAAGACTTGGTTGCAGTTTCACATGGTGGAAAGAATAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 map03030
Pfam Domains
Protein Families
RNase_H2_suC

Protein Analysis

162

Amino Acids

18.14

Weight (kDa)

7.05

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H2_suC PF08615 22 - 142 1.1e-34 Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 470
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 7 cut(s) 107, 124, 146, 262, 334, 372, 446
AluBI AGCT 4 cut(s) 23, 73, 173, 284
AluI AGCT 4 cut(s) 23, 73, 173, 284
AlwI GGATC 1 cut(s) 57
Aor51HI AGCGCT 1 cut(s) 423
ApeKI GCWGC 4 cut(s) 23, 26, 81, 424
ApoI RAATTY 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 356, 453
BbvI GCAGC 4 cut(s) 10, 13, 68, 411
BccI CCATC 2 cut(s) 89, 146
BfaI CTAG 2 cut(s) 135, 219
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 425
BisI GCNGC 4 cut(s) 24, 27, 82, 425
BlsI GCNGC 4 cut(s) 25, 28, 83, 426
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 7
BpiI GAAGAC 2 cut(s) 356, 453
Bsa29I ATCGAT 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 307, 353, 434
Bse3DI GCAATG 1 cut(s) 411
BseCI ATCGAT 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 3 cut(s) 307, 353, 434
BseXI GCAGC 4 cut(s) 10, 13, 68, 411
BshVI ATCGAT 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 313
BsmI GAATGC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 66
BspDI ATCGAT 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 3 cut(s) 307, 353, 434
BssMI GATC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 53, 242
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 4 cut(s) 10, 13, 68, 411
BstV2I GAAGAC 2 cut(s) 356, 453
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 314, 441
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 150
CviAII CATG 1 cut(s) 467
CviJI RGCY 7 cut(s) 23, 73, 127, 173, 225, 234, 284
CviKI_1 RGCY 7 cut(s) 23, 73, 127, 173, 225, 234, 284
DdeI CTNAG 2 cut(s) 53, 242
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 98
Eco47III AGCGCT 1 cut(s) 423
FaeI CATG 1 cut(s) 470
FaiI YATR 6 cut(s) 11, 290, 346, 429, 468, 487
FatI CATG 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 24, 27, 82, 425
Fsp4HI GCNGC 4 cut(s) 24, 27, 82, 425
FspBI CTAG 2 cut(s) 135, 219
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 24, 27, 82, 425
HaeII RGCGCY 1 cut(s) 425
HhaI GCGC 1 cut(s) 424
Hin1II CATG 1 cut(s) 470
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 352
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 180, 316, 378
HpyCH4V TGCA 6 cut(s) 29, 84, 196, 416, 427, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 53, 242
Hsp92II CATG 1 cut(s) 470
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 78, 200
LpnPI CCDG 8 cut(s) 83, 114, 182, 216, 320, 334, 353, 447
Lsp1109I GCAGC 4 cut(s) 10, 13, 68, 411
MaeI CTAG 2 cut(s) 135, 219
MaeIII GTNAC 1 cut(s) 254
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 4 cut(s) 179, 311, 356, 458
MflI RGATCY 1 cut(s) 49
MluCI AATT 1 cut(s) 329
MnlI CCTC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 1 cut(s) 7
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 4 cut(s) 25, 28, 83, 426
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 49
SatI GCNGC 4 cut(s) 24, 27, 82, 425
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 98
SetI ASST 5 cut(s) 25, 75, 175, 286, 342
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 135, 219
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 2 cut(s) 314, 441
TseI GCWGC 4 cut(s) 23, 26, 81, 424
TspDTI ATGAA 2 cut(s) 48, 389
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 314, 441
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 2 cut(s) 135, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.