Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010189

Physical Location & Seq

Genomic Coordinates Forward (+)

4868628 .. 4870348

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0055100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCTTAAGCTTGTGTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCAAAGTCTTCTTCTTCTTCTTCTGTTCAGGACACATCGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGAATTGTAAGCTGAAATATATTCCTCAACTTGCTAAATTGGGCATAATTGACTCTGCTATGCTAAGAATAGAATACCGTGTGGCCCGGAAGATAATAGCGGATTTGGATGATTTGCTCTTGGAGGCTGCAGGAAGAACAAGTTCAGGGCGGAAAAACCGGCACTCACATCCAACTTCAAAGACGAGGCGTGATGATTCATATTCTTATGGTGGAAGTGACTCTAGGGGTGAGGACTCTGATGATGGTCGTGGCTATGTGAGTAGGAAACCCTCTGGATCTCAAGTTCCTTTGAAGAAGCGGCTGGACCCTTCAGAAGTAGATGATGAACATGGCAGCCAGGAAGAACGTGATTATAATGATAGCGGTTCTGACCGTGGGGGAGAGAGCAATGAATCTGATGTTGGCAGTAATCTTTACAAAGATGAAGATGACAGGCGAAAGCTTGCAGAAATGTCTGAACTTCAAAGAGAGCTGATTCTGTCCAAGAGAGCGCAGAAGAAAGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2_suC

Protein Analysis

261

Amino Acids

29.34

Weight (kDa)

5.67

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39440 AT2G39440
fragaria_vesca	FvH4_3g12150 FvH4_3g12150
malus_domestica	MD05G1254400.v1.1 MD10G1234600.v1.1
prunus_persica	Prupe.4G110300_v2.0.a1
pyrus_communis	pycom10g19640
rosa_chinensis	RchiOBHm_Chr5g0019891
rosa_laevigata	RLG00000032482
rosa_multiflora	Rmu_sc0000344.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058280
rosa_rugosa	Rorug05G0054900.1 Rorug05G0055000.1 Rorug05G0055100 Rorug05G0055200
rosa_samantha	Rh5AG144900 Rh5BG144600 Rh5CG155900 Rh5DG143900
rosa_wichuraiana	Rw5G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccBSI	CCGCTC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	5 cut(s)	236, 374, 424, 574, 639
AclWI	GGATC	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	6 cut(s)	67, 94, 187, 453, 568, 740
AjnI	CCWGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	4 cut(s)	18, 50, 660, 692
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	10, 168, 286, 718, 748
AluI	AGCT	5 cut(s)	10, 168, 286, 718, 748
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	401, 609
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	2 cut(s)	358, 580
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	388, 621
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	5
BisI	GCNGC	4 cut(s)	236, 402, 575, 610
BlsI	GCNGC	4 cut(s)	237, 403, 576, 611
Bme1390I	CCNGG	2 cut(s)	361, 614
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	358, 580
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	361, 614
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	3 cut(s)	91, 388, 442
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	670
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	388, 621
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	361, 433
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	551
BspACI	CCGC	5 cut(s)	236, 374, 424, 574, 639
BspANI	GGCC	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	1 cut(s)	551
BssNAI	GTATAC	1 cut(s)	52
Bst1107I	GTATAC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	353, 650
Bst6I	CTCTTC	3 cut(s)	21, 54, 259
BstAFI	CTTAAG	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	91, 388, 442
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	359, 612
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	388, 621
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	91, 388, 442
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	720
CfoI	GCGC	1 cut(s)	769
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	358, 580
CviAII	CATG	2 cut(s)	265, 605
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
Eam1104I	CTCTTC	3 cut(s)	21, 54, 259
EarI	CTCTTC	3 cut(s)	21, 54, 259
EciI	GGCGGA	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	2 cut(s)	268, 608
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 65, 97
FatI	CATG	2 cut(s)	264, 604
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	236, 402, 575, 610
FokI	GGATG	3 cut(s)	98, 395, 429
Fsp4HI	GCNGC	4 cut(s)	236, 402, 575, 610
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	4 cut(s)	236, 402, 575, 610
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	361, 433
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	2 cut(s)	268, 608
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HindIII	AAGCTT	2 cut(s)	8, 716
HinfI	GANTC	7 cut(s)	194, 326, 470, 494, 509, 668, 751
HpaII	CCGG	2 cut(s)	361, 433
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	52, 140
Hpy188I	TCNGA	6 cut(s)	104, 514, 589, 646, 673, 733
Hpy188III	TCNNGA	2 cut(s)	224, 549
Hpy8I	GTNNAC	2 cut(s)	52, 140
HpyAV	CCTTC	2 cut(s)	88, 594
HpyCH4III	ACNGT	2 cut(s)	353, 650
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	3 cut(s)	250, 404, 722
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	2 cut(s)	268, 608
HspAI	GCGC	1 cut(s)	767
Kzo9I	GATC	1 cut(s)	551
Lsp1109I	GCAGC	2 cut(s)	388, 621
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	30, 491
MalI	GATC	1 cut(s)	553
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	1 cut(s)	551
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	3 cut(s)	277, 311, 321
MlyI	GAGTC	4 cut(s)	203, 320, 488, 503
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	8 cut(s)	34, 40, 126, 309, 391, 453, 499, 556
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	1 cut(s)	6
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	2 cut(s)	361, 433
MspR9I	CCNGG	2 cut(s)	361, 614
MvaI	CCWGG	1 cut(s)	614
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	551
NlaIII	CATG	2 cut(s)	268, 608
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	470, 668, 751
PkrI	GCNGC	4 cut(s)	237, 403, 576, 611
PleI	GAGTC	4 cut(s)	202, 320, 488, 503
PpsI	GAGTC	4 cut(s)	202, 320, 488, 503
PsiI	TTATAA	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	358, 580
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	236, 402, 575, 610
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	2 cut(s)	358, 580
SchI	GAGTC	4 cut(s)	203, 320, 488, 503
ScrFI	CCNGG	2 cut(s)	361, 614
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	5, 555
SmoI	CTYRAG	2 cut(s)	5, 555
Sse9I	AATT	3 cut(s)	277, 311, 321
SsiI	CCGC	5 cut(s)	236, 374, 424, 574, 639
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	359, 612
TaaI	ACNGT	2 cut(s)	353, 650
TaiI	ACGT	1 cut(s)	625
TasI	AATT	3 cut(s)	277, 311, 321
TauI	GCSGC	2 cut(s)	238, 577
TfiI	GAWTC	3 cut(s)	470, 668, 751
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	401, 609
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	4 cut(s)	462, 615, 681, 714
TspRI	CASTG	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.