Rh5DG143900

Ribonuclease H2 subunit C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010189
Physical Location & Seq
Forward (+)
14760917 .. 14773115
12199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG143900.1

Sequence Viewer

Length: 774 bp
ATGGACAAGGGTATCCAAGGGACCATAAATCTGAGAAGAAATGGAGAAACTGTGGATTTGAGTGGTAAGGTGCACCTGCTCCCCTGCTGCATCAAATACAATGGCCCTTGTGACGTTTCGGACTACTTCAAACCCAAACCCACTGGAATGGAGTCCGAGGGCCTAAAGACGCAGGAGGCTTGTTTCCGAGGAAGGAAGTTGCTGGGAGCATCCGTTCCCATCCCAGATGGGTATTCTGGATTTGTCCTTGGGAAGAAGAGTCTTGACAAGAGAAAAGCTTCCAATATATCTGAAGGGAATTCAAACTGTTGGGAGATAAATGCCAAATATAAAAGCATTACATATTGGAACCATGACAGCCTTCCTTCACAGGATGATGCATTCTTGCGTTCTTTTCAGTGGCTTGCTGTAGCAAAAACTATGCATGAACCAGTAACAGCAGAAGATTTGGTTTCTGCATCCGCTGCTCTGGAAAACTCTGATTCTCCTTCTTTCTCCGCAAATCCCCGAGACGCCGACAACTCGACAAGCGACAGATGCGAATCATGCTATTGTTCCGGTCTTGTAGCCTGGTTACCAGCCGCGATTTTTCAGGTTATCAAGTACACTTGGATTAAGCACAGAGTGCTCTCCAGTCTCGCATCCTCCTGTTGCTGTAGTCTGCGATTTAGGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCCAAATCTTCGGCAGAGCTCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 map03030
Pfam Domains
Protein Families
RNase_H2_suC

Protein Analysis

257

Amino Acids

28.37

Weight (kDa)

8.44

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H2_suC PF08615 24 - 141 1.7e-27 Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 84
AccII CGCG 1 cut(s) 584
AciI CCGC 3 cut(s) 462, 498, 582
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 513
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 605
AgsI TTSAA 4 cut(s) 130, 303, 684, 734
AjnI CCWGG 1 cut(s) 569
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
AluBI AGCT 3 cut(s) 278, 725, 763
AluI AGCT 3 cut(s) 278, 725, 763
Alw21I GWGCWC 3 cut(s) 75, 630, 765
Alw26I GTCTC 3 cut(s) 504, 641, 747
Alw44I GTGCAC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 3 cut(s) 103, 160, 704
ApaLI GTGCAC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 87, 464
ApoI RAATTY 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 21, 104, 160
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 75
BaeI ACNNNNGTAYC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 765
Bbv12I GWGCWC 3 cut(s) 75, 630, 765
BbvI GCAGC 2 cut(s) 74, 451
BccI CCATC 2 cut(s) 221, 227
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 23
BcoDI GTCTC 3 cut(s) 504, 641, 747
BfmI CTRYAG 2 cut(s) 408, 655
BfuAI ACCTGC 1 cut(s) 84
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 3 cut(s) 88, 465, 582
BlsI GCNGC 3 cut(s) 89, 466, 583
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 507
BmgT120I GGNCC 3 cut(s) 21, 104, 160
BmiI GGNNCC 2 cut(s) 22, 350
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 6 cut(s) 99, 218, 367, 467, 527, 650
BpmI CTGGAG 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 16, 156, 187, 247
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 198, 228
Bse1I ACTGG 3 cut(s) 148, 431, 633
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 4 cut(s) 16, 156, 187, 247
BseGI GGATG 5 cut(s) 209, 219, 379, 458, 641
BseJI GATNNNNATC 1 cut(s) 541
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 148, 431, 633
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 2 cut(s) 74, 451
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 3 cut(s) 105, 162, 706
BsiHKAI GWGCWC 3 cut(s) 75, 630, 765
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 504, 641, 747
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 105, 162, 706
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 75, 630, 765
BspACI CCGC 3 cut(s) 462, 498, 582
BspANI GGCC 3 cut(s) 105, 162, 706
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 2 cut(s) 22, 350
BspMI ACCTGC 1 cut(s) 84
BsrI ACTGG 3 cut(s) 148, 431, 633
BssECI CCNNGG 4 cut(s) 16, 156, 187, 247
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 16, 247
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 52, 308, 688
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 513
BstAPI GCANNNNNTGC 2 cut(s) 464, 625
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 573
BstF5I GGATG 5 cut(s) 209, 219, 379, 458, 641
BstFNI CGCG 1 cut(s) 584
BstMAI GTCTC 3 cut(s) 504, 641, 747
BstMWI GCNNNNNNNGC 4 cut(s) 464, 537, 546, 625
BstNI CCWGG 1 cut(s) 571
BstPI GGTNACC 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 408, 655
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 74, 451
BstXI CCANNNNNNTGG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 3 cut(s) 105, 162, 706
BtsCI GGATG 5 cut(s) 209, 219, 379, 458, 641
BtsIMutI CAGTG 3 cut(s) 141, 404, 707
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 21, 104, 160
CseI GACGC 2 cut(s) 178, 521
Csp6I GTAC 1 cut(s) 604
CviAII CATG 3 cut(s) 353, 425, 546
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 1 cut(s) 32
DraIII CACNNNGTG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 2 cut(s) 16, 247
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 763
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 2 cut(s) 16, 247
EcoT22I ATGCAT 2 cut(s) 382, 426
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 2 cut(s) 16, 247
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 3 cut(s) 356, 428, 549
FaiI YATR 8 cut(s) 26, 287, 330, 343, 354, 422, 426, 547
FaqI GGGAC 1 cut(s) 34
FatI CATG 3 cut(s) 352, 424, 545
Fnu4HI GCNGC 3 cut(s) 88, 465, 582
FokI GGATG 5 cut(s) 196, 206, 386, 445, 628
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 3 cut(s) 88, 465, 582
GluI GCNGC 3 cut(s) 88, 465, 582
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 3 cut(s) 105, 162, 706
HapII CCGG 1 cut(s) 558
HgaI GACGC 2 cut(s) 178, 521
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 3 cut(s) 356, 428, 549
HindIII AAGCTT 2 cut(s) 276, 723
HinfI GANTC 5 cut(s) 152, 259, 482, 542, 730
HpaII CCGG 1 cut(s) 558
Hpy166II GTNNAC 2 cut(s) 73, 606
Hpy188I TCNGA 6 cut(s) 33, 121, 157, 188, 292, 481
Hpy188III TCNNGA 3 cut(s) 237, 263, 470
Hpy8I GTNNAC 2 cut(s) 73, 606
HpyAV CCTTC 6 cut(s) 186, 287, 371, 375, 498, 717
HpyCH4III ACNGT 3 cut(s) 52, 308, 688
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 5 cut(s) 73, 90, 380, 424, 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 537, 546, 625
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 3 cut(s) 356, 428, 549
LmnI GCTCC 2 cut(s) 84, 206
Lsp1109I GCAGC 2 cut(s) 74, 451
LweI GCATC 6 cut(s) 99, 218, 367, 467, 527, 650
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 4 cut(s) 110, 433, 573, 717
MboII GAAGA 5 cut(s) 48, 265, 268, 455, 744
MhlI GDGCHC 3 cut(s) 75, 630, 765
MluCI AATT 1 cut(s) 298
MlyI GAGTC 2 cut(s) 161, 268
MnlI CCTC 4 cut(s) 151, 169, 182, 655
Mph1103I ATGCAT 2 cut(s) 382, 426
MroXI GAANNNNTTC 1 cut(s) 277
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 464, 537, 546, 625
NlaIII CATG 3 cut(s) 356, 428, 549
NlaIV GGNNCC 2 cut(s) 22, 350
NmuCI GTSAC 2 cut(s) 110, 717
NsiI ATGCAT 2 cut(s) 382, 426
PaqCI CACCTGC 1 cut(s) 84
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 482, 542, 730
PkrI GCNGC 3 cut(s) 89, 466, 583
PleI GAGTC 2 cut(s) 160, 267
PpsI GAGTC 2 cut(s) 160, 267
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 22, 350
PspPI GGNCC 3 cut(s) 21, 104, 160
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 88, 465, 582
Sau96I GGNCC 3 cut(s) 21, 104, 160
SchI GAGTC 2 cut(s) 161, 268
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 3 cut(s) 75, 630, 765
SetI ASST 7 cut(s) 72, 78, 117, 280, 597, 727, 765
SfaNI GCATC 6 cut(s) 99, 218, 367, 467, 527, 650
SfcI CTRYAG 2 cut(s) 408, 655
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 298
SsiI CCGC 3 cut(s) 462, 498, 582
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 2 cut(s) 16, 247
TaaI ACNGT 3 cut(s) 52, 308, 688
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 524
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 3 cut(s) 482, 542, 730
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 3 cut(s) 148, 404, 707
TseFI GTSAC 2 cut(s) 110, 717
TseI GCWGC 2 cut(s) 87, 464
Tsp45I GTSAC 2 cut(s) 110, 717
TspDTI ATGAA 4 cut(s) 441, 666, 686, 699
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 3 cut(s) 148, 404, 707
VneI GTGCAC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 277
Zsp2I ATGCAT 2 cut(s) 382, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.