Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000344.1

Orthogroup ID

OG0010189

Physical Location & Seq

Genomic Coordinates Reverse (-)

39967 .. 42315

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000344.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggacaagggtatccaagggaccataaatctgagaagaaatggagaaactgtggatttgagtggtaaggtgcacctgctcccctgctgcatcaaatacaatggcccttgtgacgtttcgaactacttcaaacccaaacccactggaatggagtccgagggcctaaagacgcaggaggcttgtttccgaggaaggaagttgctgggagcatccgttcccatcccagatgggtattctgggaattcaaactgttgggagataaatgccaaatataaaagcattacatattggaaccatgacagccttccttcacaggatgatgcattcttgcgttcttttcagtggcttgctgtagcaaaaactatgcatgaaccagtaacagcagaagatttggtttctgcatccgctgctctggaaaagttgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2_suC

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

6.81

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39440 AT2G39440
fragaria_vesca	FvH4_3g12150 FvH4_3g12150
malus_domestica	MD05G1254400.v1.1 MD10G1234600.v1.1
prunus_persica	Prupe.4G110300_v2.0.a1
pyrus_communis	pycom10g19640
rosa_chinensis	RchiOBHm_Chr5g0019891
rosa_laevigata	RLG00000032482
rosa_multiflora	Rmu_sc0000344.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058280
rosa_rugosa	Rorug05G0054900.1 Rorug05G0055000.1 Rorug05G0055100 Rorug05G0055200
rosa_samantha	Rh5AG144900 Rh5BG144600 Rh5CG155900 Rh5DG143900
rosa_wichuraiana	Rw5G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	84
AciI	CCGC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	130, 246, 424
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
Alw21I	GWGCWC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	103, 160
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	87, 407
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	21, 104, 160
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	75
BaeI	ACNNNNGTAYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	74, 394
BccI	CCATC	2 cut(s)	221, 227
BciVI	GTATCC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	88, 408
BlsI	GCNGC	2 cut(s)	89, 409
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	21, 104, 160
BmiI	GGNNCC	2 cut(s)	22, 293
BmsI	GCATC	4 cut(s)	99, 218, 310, 410
Bpu14I	TTCGAA	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	16, 156, 187
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 198, 228
Bse1I	ACTGG	2 cut(s)	148, 374
BseDI	CCNNGG	3 cut(s)	16, 156, 187
BseGI	GGATG	4 cut(s)	209, 219, 322, 401
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	148, 374
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	74, 394
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	105, 162
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	105, 162
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	2 cut(s)	105, 162
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	22, 293
BspMI	ACCTGC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	148, 374
BssECI	CCNNGG	3 cut(s)	16, 156, 187
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	52, 251
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	4 cut(s)	209, 219, 322, 401
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	74, 394
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	105, 162
BtsCI	GGATG	4 cut(s)	209, 219, 322, 401
BtsIMutI	CAGTG	2 cut(s)	141, 347
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	21, 104, 160
CseI	GACGC	1 cut(s)	178
CviAII	CATG	2 cut(s)	296, 368
CviJI	RGCY	5 cut(s)	105, 162, 179, 303, 346
CviKI_1	RGCY	5 cut(s)	105, 162, 179, 303, 346
DdeI	CTNAG	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	2 cut(s)	325, 369
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	299, 371
FaiI	YATR	6 cut(s)	26, 273, 286, 297, 365, 369
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	295, 367
Fnu4HI	GCNGC	2 cut(s)	88, 408
FokI	GGATG	4 cut(s)	196, 206, 329, 388
Fsp4HI	GCNGC	2 cut(s)	88, 408
GluI	GCNGC	2 cut(s)	88, 408
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	105, 162
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	299, 371
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	33, 157, 188
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	186, 314, 318
HpyCH4III	ACNGT	2 cut(s)	52, 251
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	73, 90, 323, 367, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	299, 371
LmnI	GCTCC	2 cut(s)	84, 206
Lsp1109I	GCAGC	2 cut(s)	74, 394
LweI	GCATC	4 cut(s)	99, 218, 310, 410
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	110, 376
MboII	GAAGA	2 cut(s)	48, 398
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	151, 169, 182
Mph1103I	ATGCAT	2 cut(s)	325, 369
MroXI	GAANNNNTTC	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	407
NlaIII	CATG	2 cut(s)	299, 371
NlaIV	GGNNCC	2 cut(s)	22, 293
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	2 cut(s)	325, 369
NspV	TTCGAA	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	89, 409
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	22, 293
PspPI	GGNCC	3 cut(s)	21, 104, 160
RseI	CAYNNNNRTG	1 cut(s)	146
SatI	GCNGC	2 cut(s)	88, 408
Sau96I	GGNCC	3 cut(s)	21, 104, 160
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	3 cut(s)	72, 78, 117
SfaNI	GCATC	4 cut(s)	99, 218, 310, 410
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	52, 251
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	241
TscAI	CASTG	2 cut(s)	148, 347
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	87, 407
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	148, 347
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	325, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.