AT2G39470

PsbP-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010319
Physical Location & Seq
Forward (+)
16476198 .. 16477843
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39470.1

Sequence Viewer

Length: 717 bp
ATGGCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTCCCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATCCGGTGGTAAGGCCGACTCCTCGGAGAGTACTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAACTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCTACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGGAATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATGTGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAGAGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCTACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAAGAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACTACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAGTTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGA

Protein Analysis

238

Amino Acids

26.96

Weight (kDa)

8.89

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 87 - 235 4.5e-45 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 25, 159, 385
AclWI GGATC 2 cut(s) 285, 697
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 66, 323
AcuI CTGAAG 3 cut(s) 264, 316, 692
AfaI GTAC 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 219, 355, 680, 700
AluBI AGCT 5 cut(s) 95, 185, 261, 494, 676
AluI AGCT 5 cut(s) 95, 185, 261, 494, 676
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 285, 697
AoxI GGCC 2 cut(s) 123, 687
ApeKI GCWGC 3 cut(s) 156, 476, 673
ApoI RAATTY 2 cut(s) 66, 323
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 33
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 168, 488, 685
BccI CCATC 4 cut(s) 91, 316, 506, 521
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 3 cut(s) 157, 477, 674
BlsI GCNGC 3 cut(s) 158, 478, 675
BmcAI AGTACT 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 110, 417
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 168, 488, 685
BshFI GGCC 2 cut(s) 125, 689
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 125, 689
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 277, 454, 702
BspACI CCGC 3 cut(s) 25, 159, 385
BspANI GGCC 2 cut(s) 125, 689
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 2 cut(s) 285, 697
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 277, 454, 702
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 3 cut(s) 167, 240, 435
BstAPI GCANNNNNTGC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 110, 417
BstKTI GATC 3 cut(s) 280, 457, 705
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 277, 454, 702
BstMWI GCNNNNNNNGC 2 cut(s) 382, 599
BstSFI CTRYAG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 168, 488, 685
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 702
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 1 cut(s) 702
BsuRI GGCC 2 cut(s) 125, 689
BtsCI GGATG 2 cut(s) 110, 417
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 2 cut(s) 341, 422
CviJI RGCY 8 cut(s) 95, 125, 185, 261, 350, 494, 676, 689
CviKI_1 RGCY 8 cut(s) 95, 125, 185, 261, 350, 494, 676, 689
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 560
DpnI GATC 3 cut(s) 279, 456, 704
DpnII GATC 3 cut(s) 277, 454, 702
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 167, 240, 435
EarI CTCTTC 3 cut(s) 167, 240, 435
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 3 cut(s) 264, 316, 692
EcoO109I RGGNCCY 1 cut(s) 431
FaeI CATG 2 cut(s) 344, 425
FatI CATG 2 cut(s) 340, 421
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 157, 477, 674
FokI GGATG 2 cut(s) 97, 404
Fsp4HI GCNGC 3 cut(s) 157, 477, 674
FspBI CTAG 1 cut(s) 458
GluI GCNGC 3 cut(s) 157, 477, 674
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 2 cut(s) 125, 689
HapII CCGG 1 cut(s) 114
Hin1II CATG 2 cut(s) 344, 425
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 128, 344, 692
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 136, 313, 711
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 171, 361, 645, 716
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 370, 376, 476, 578, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 599
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 2 cut(s) 344, 425
Kzo9I GATC 3 cut(s) 277, 454, 702
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 5 cut(s) 127, 237, 301, 319, 376
Lsp1109I GCAGC 3 cut(s) 168, 488, 685
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 545
MalI GATC 3 cut(s) 279, 456, 704
MboI GATC 3 cut(s) 277, 454, 702
MboII GAAGA 6 cut(s) 184, 257, 296, 452, 536, 712
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 4 cut(s) 66, 166, 219, 323
MlyI GAGTC 2 cut(s) 122, 686
MmeI TCCRAC 2 cut(s) 586, 616
MnlI CCTC 6 cut(s) 22, 142, 312, 436, 510, 651
MspA1I CMGCKG 2 cut(s) 27, 159
MspI CCGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 382, 599
NdeII GATC 3 cut(s) 277, 454, 702
NlaIII CATG 2 cut(s) 344, 425
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 3 cut(s) 158, 478, 675
PleI GAGTC 2 cut(s) 122, 686
PpsI GAGTC 2 cut(s) 122, 686
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
PspPI GGNCC 1 cut(s) 431
PspPPI RGGWCCY 1 cut(s) 431
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 702
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SatI GCNGC 3 cut(s) 157, 477, 674
Sau3AI GATC 3 cut(s) 277, 454, 702
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 2 cut(s) 122, 686
SduI GDGCHC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 374
SinI GGWCC 1 cut(s) 431
Sse9I AATT 4 cut(s) 66, 166, 219, 323
SsiI CCGC 3 cut(s) 25, 159, 385
SspMI CTAG 1 cut(s) 458
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 1 cut(s) 548
TaqI TCGA 1 cut(s) 280
TasI AATT 4 cut(s) 66, 166, 219, 323
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 344
TscAI CASTG 1 cut(s) 603
TseI GCWGC 3 cut(s) 156, 476, 673
TspDTI ATGAA 4 cut(s) 99, 385, 438, 524
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 2 cut(s) 66, 323
XspI CTAG 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.