Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010319

Physical Location & Seq

Genomic Coordinates Reverse (-)

17133716 .. 17137939

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21400.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAATCTCATCACTCTCATTGAGCTGGGTTTCTACTACCTTGCCTGACAATAAGTTGAACTTACTCAATCATAATGAGGTTCTGAAAGCTTCCGGTGCGTACTTTTCCGGTAAAACCATTGTATGCTCCAGTGAGACAGCTTCCACTGAAGAAAGCCATTACAAGAGAAGGCCACTACTTTTGGGAGTTGGAGCACTAACTACAAGTCTACTTCATACAAGTTCCCTCTTGGCTGAAGGAATACCTGACAAGTTCCGAGGTTATGTTGACAAAGAAGATGGGTATTCATATTATTACCCCTCTGATTGGAGGGATTTTGACTTCAGGGCACATGACTCTGCATTCAAGGATAGATATATGCAACTTCACAATGTTAGAGTGAGATTTATACCTACAGATAAAACCGATATCCATGATTTGGGTCCATTGGAAGAGGCTGTTCCCTATTTGGTGAGACACAAATTTGCTGCACCAAACCAAGTTGAAAAGATATTCAACATGCAGGAGAAAACTATAGATGGGAAGAACTATTACACCTTCGAGTACGGACTTACATCTCCCAACTTTGCTACCACTTCCTTTGCAACCATAGCCATTGGAAATGGGAGATATTACACCCTGATTGTCGGAGCGAATGAGAGACGGTGGAAAAGATACCGCAACCAGCTTAAAATGGTTGCAGACTCTTTCAGGATTCTTGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

237

Amino Acids

27.04

Weight (kDa)

8.47

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	85 - 170	1.5e-18	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39470 AT2G39470 AT2G39470
fragaria_vesca	FvH4_7g21400 FvH4_7g21400
malus_domestica	MD01G1121500.v1.1 MD07G1191200.v1.1
prunus_persica	Prupe.2G229200_v2.0.a1
pyrus_communis	pycom01g14860
rosa_chinensis	RchiOBHm_Chr1g0365771
rosa_laevigata	RLG00000027401
rosa_multiflora	Rmu_sc0002093.1_g000034 Rmu_sc0004311.1_g000017
rosa_roxburghii	Rroxscaffold_4G00290910
rosa_rugosa	Rorug01G0324000 Rorug01G0324100
rosa_samantha	Rh1AG332800 Rh1BG293700 Rh1CG310600 Rh1DG326100
rosa_wichuraiana	Rw1G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	211
AciI	CCGC	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	3 cut(s)	171, 258, 310
AfaI	GTAC	2 cut(s)	104, 548
AfiI	CCNNNNNNNGG	2 cut(s)	309, 421
AgsI	TTSAA	4 cut(s)	61, 349, 488, 499
AluBI	AGCT	4 cut(s)	27, 92, 143, 670
AluI	AGCT	4 cut(s)	27, 92, 143, 670
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	131, 451, 637
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	275, 515
BcoDI	GTCTC	3 cut(s)	131, 451, 637
BfmI	CTRYAG	2 cut(s)	396, 516
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	95, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 421
Bse1I	ACTGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	309, 421
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	96, 111
BslI	CCNNNNNNNGG	2 cut(s)	309, 421
BsmAI	GTCTC	3 cut(s)	131, 451, 637
BsmBI	CGTCTC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	199, 334
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	1 cut(s)	429
BstMAI	GTCTC	3 cut(s)	131, 451, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 593
BstNSI	RCATGY	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	396, 516
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	139, 147
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	103, 547
CspCI	CAANNNNNGTGG	4 cut(s)	165, 200, 565, 600
CviAII	CATG	3 cut(s)	335, 416, 502
CviJI	RGCY	9 cut(s)	27, 92, 143, 159, 175, 236, 440, 596, 670
CviKI_1	RGCY	9 cut(s)	27, 92, 143, 159, 175, 236, 440, 596, 670
CviQI	GTAC	2 cut(s)	103, 547
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	3 cut(s)	171, 258, 310
EcoRV	GATATC	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	3 cut(s)	338, 419, 505
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	3 cut(s)	334, 415, 501
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	471
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	96, 111
Hin1II	CATG	3 cut(s)	338, 419, 505
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	338, 686, 697
HpaII	CCGG	2 cut(s)	96, 111
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	212, 271
Hpy188I	TCNGA	4 cut(s)	87, 260, 307, 632
Hpy188III	TCNNGA	2 cut(s)	694, 701
Hpy8I	GTNNAC	2 cut(s)	212, 271
HpyAV	CCTTC	3 cut(s)	165, 233, 550
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	6 cut(s)	344, 364, 473, 505, 587, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 593
Hsp92II	CATG	3 cut(s)	338, 419, 505
LmnI	GCTCC	3 cut(s)	134, 194, 632
Lsp1109I	GCAGC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	164, 290, 446, 538
MhlI	GDGCHC	2 cut(s)	199, 334
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	332, 680
MmeI	TCCRAC	2 cut(s)	172, 610
MnlI	CCTC	6 cut(s)	73, 239, 254, 306, 313, 430
MseI	TTAA	1 cut(s)	672
MspI	CCGG	2 cut(s)	96, 111
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	98, 593
NlaIII	CATG	3 cut(s)	338, 419, 505
NlaIV	GGNNCC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	505
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	2 cut(s)	332, 680
PpsI	GAGTC	2 cut(s)	332, 680
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	425
RsaI	GTAC	2 cut(s)	104, 548
RsaNI	GTAC	2 cut(s)	103, 547
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	471
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	332, 680
SduI	GDGCHC	2 cut(s)	199, 334
SfcI	CTRYAG	2 cut(s)	396, 516
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	543
TasI	AATT	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	139, 154
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	206, 279
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	2 cut(s)	139, 154
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.