Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010319

Physical Location & Seq

Genomic Coordinates Reverse (-)

14932857 .. 14935211

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACACGTGTCTATTTTCAATTTGTTTTTCAGCCGTACTTGCTACTCTTCTTTCAACAGCCAAGCATTACGTATTTAATATCAAGAGTTCATGTCATCAACTGTCATATTTGCTTTCCGATATAGTCATGGCAATTTCATCATCCCTCTCATTGAGCTGCTGGGTTTCTACTGCCATACCCGACAAGTTTTACTGCAATGAGTTGCCACGAGCTACCTCGGCTCATTTTTCATGCAAATCCATCACTTGCTCAGGAGAGTCAGCCTCCATTGAAGAAAGCCATTGCAAGAGAAGGCCTCTACTTTTAGGACTTGGGGCACTAACCACAAGTCTACTTCATCCAAATTCCCTCTTTGCTCAAGAAATACCGGAAAAGTTTCGAGCTTTCGTCGACAAAGTAGATGGGTATTCATACTACTACCCCAACGATTGGAGGGACTTTGAGTTTAGAGCACATGACTCTGCATTCAAGGACAGATACATGCAGCTGCATAATGTTAGAGTGAGATTTATACCCACAAATAAAACTGACATCCATGATTTGGGTCCAATGGAACAGGTTGTTACCGATCTGGTGAGGCATAAACTTGCTGCACCAAACCAGTATGCAACTATATTTGGCGTCGAGGAGAAAAACATCGATGGGAAAAATTATTACACCATTGAGTTTGGACTTGAATCTCCAAACTTCGCTACCACTTCATTCGCAACCATAGCTATTGGAAACGGGAGATACTACACCCTGATTGTCGGAGCAAACGAAAGACGGTGGAAAAGATACCGCAACCAGCTTAAAGTGGTAGCAGACTCTTTCAGAATGCTTGACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

278

Amino Acids

31.54

Weight (kDa)

8.07

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	126 - 273	1.8e-43	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39470 AT2G39470 AT2G39470
fragaria_vesca	FvH4_7g21400 FvH4_7g21400
malus_domestica	MD01G1121500.v1.1 MD07G1191200.v1.1
prunus_persica	Prupe.2G229200_v2.0.a1
pyrus_communis	pycom01g14860
rosa_chinensis	RchiOBHm_Chr1g0365771
rosa_laevigata	RLG00000027401
rosa_multiflora	Rmu_sc0002093.1_g000034 Rmu_sc0004311.1_g000017
rosa_roxburghii	Rroxscaffold_4G00290910
rosa_rugosa	Rorug01G0324000 Rorug01G0324100
rosa_samantha	Rh1AG332800 Rh1BG293700 Rh1CG310600 Rh1DG326100
rosa_wichuraiana	Rw1G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	432, 544
AccI	GTMKAC	2 cut(s)	334, 393
AciI	CCGC	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	346
AcvI	CACGTG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	432, 544
AflIII	ACRYGT	2 cut(s)	6, 8
AgsI	TTSAA	5 cut(s)	21, 57, 275, 472, 680
AluBI	AGCT	6 cut(s)	159, 215, 386, 490, 719, 793
AluI	AGCT	6 cut(s)	159, 215, 386, 490, 719, 793
Alw21I	GWGCWC	1 cut(s)	457
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	4 cut(s)	159, 487, 490, 593
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	4 cut(s)	146, 477, 499, 580
BccI	CCATC	3 cut(s)	251, 398, 638
BceAI	ACGGC	1 cut(s)	20
BisI	GCNGC	4 cut(s)	160, 488, 491, 594
BlsI	GCNGC	4 cut(s)	161, 489, 492, 595
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	9
BplI	GAGNNNNNCTC	4 cut(s)	251, 283, 283, 315
Bpu10I	CCTNAGC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	642
BsaAI	YACGTR	2 cut(s)	9, 73
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 544
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	2 cut(s)	205, 283
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	143, 340, 534
BseLI	CCNNNNNNNGG	2 cut(s)	432, 544
BseMI	GCAATG	2 cut(s)	205, 283
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	146, 477, 499, 580
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	432, 544
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	2 cut(s)	467, 825
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	322, 457
Bsp143I	GATC	1 cut(s)	571
BspACI	CCGC	1 cut(s)	784
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	549
BsrDI	GCAATG	2 cut(s)	205, 283
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	105, 771
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	624
BstBAI	YACGTR	2 cut(s)	9, 73
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	143, 340, 534
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 221, 716
BstNSI	RCATGY	1 cut(s)	487
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	322
BstSNI	TACGTA	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	146, 477, 499, 580
Bsu15I	ATCGAT	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	642
BtsCI	GGATG	3 cut(s)	143, 340, 534
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	6 cut(s)	93, 130, 234, 458, 484, 539
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	548
Eco72I	CACGTG	1 cut(s)	9
FaeI	CATG	6 cut(s)	96, 133, 237, 461, 487, 542
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	92, 129, 233, 457, 483, 538
FblI	GTMKAC	2 cut(s)	334, 393
Fnu4HI	GCNGC	4 cut(s)	160, 488, 491, 594
FokI	GGATG	3 cut(s)	130, 327, 521
Fsp4HI	GCNGC	4 cut(s)	160, 488, 491, 594
GluI	GCNGC	4 cut(s)	160, 488, 491, 594
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	613
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	6 cut(s)	96, 133, 237, 461, 487, 542
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	260, 461, 680, 809
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	335, 394
Hpy188I	TCNGA	4 cut(s)	121, 755, 818, 833
Hpy188III	TCNNGA	3 cut(s)	85, 255, 362
Hpy8I	GTNNAC	2 cut(s)	335, 394
Hpy99I	CGWCG	2 cut(s)	395, 629
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	105, 771
HpyCH4IV	ACGT	2 cut(s)	8, 72
HpyCH4V	TGCA	8 cut(s)	198, 237, 288, 467, 487, 493, 596, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 221, 716
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	2 cut(s)	8, 72
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	6 cut(s)	96, 133, 237, 461, 487, 542
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	755
LpnPI	CCDG	8 cut(s)	148, 240, 384, 545, 560, 617, 758, 803
Lsp1109I	GCAGC	4 cut(s)	146, 477, 499, 580
MaeII	ACGT	2 cut(s)	8, 72
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	2 cut(s)	41, 287
MhlI	GDGCHC	2 cut(s)	322, 457
MluCI	AATT	4 cut(s)	21, 135, 346, 652
MlyI	GAGTC	3 cut(s)	269, 455, 803
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	158, 229, 277, 309, 362, 429, 573, 622
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	78, 795
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	1 cut(s)	371
Mva1269I	GAATGC	2 cut(s)	467, 825
MwoI	GCNNNNNNNGC	3 cut(s)	41, 221, 716
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	6 cut(s)	96, 133, 237, 461, 487, 542
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	200
NspI	RCATGY	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	2 cut(s)	467, 825
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	680
PflMI	CCANNNNNTGG	2 cut(s)	432, 544
PkrI	GCNGC	4 cut(s)	161, 489, 492, 595
PleI	GAGTC	3 cut(s)	268, 455, 803
PmaCI	CACGTG	1 cut(s)	9
PmlI	CACGTG	1 cut(s)	9
PpsI	GAGTC	3 cut(s)	268, 455, 803
Ppu21I	YACGTR	2 cut(s)	9, 73
PshAI	GACNNNNGTC	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	78, 795
SatI	GCNGC	4 cut(s)	160, 488, 491, 594
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	3 cut(s)	269, 455, 803
SduI	GDGCHC	2 cut(s)	322, 457
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
SnaBI	TACGTA	1 cut(s)	73
Sse9I	AATT	4 cut(s)	21, 135, 346, 652
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	784
StuI	AGGCCT	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	105, 771
TaiI	ACGT	2 cut(s)	11, 75
TaqI	TCGA	4 cut(s)	382, 393, 627, 642
TasI	AATT	4 cut(s)	21, 135, 346, 652
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	2 cut(s)	78, 795
Tru9I	TTAA	2 cut(s)	78, 795
TseI	GCWGC	4 cut(s)	159, 487, 490, 593
TspDTI	ATGAA	6 cut(s)	81, 129, 222, 329, 402, 693
Van91I	CCANNNNNTGG	2 cut(s)	432, 544
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	487
XmiI	GTMKAC	2 cut(s)	334, 393
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.