RLG00000027401

psbP-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010319
Physical Location & Seq
Forward (+)
11231035 .. 11233771
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027401

Sequence Viewer

Length: 912 bp
ATGGCAACTGGCCACGTGTTTTTTTTTTCATTTTTTTTTTTCAATAATATGCAAGTCACGTGCCTCTCTGTCAACTTCAAGCCTCATAACCCACATCAGAAAGCCAAACTACAAGCTTCAGTCTCCACCATCCACTTACAATATCAGAATTCTGAAGCCAAAGCCGGTTCTCACGTTGTCAGTTCTCACATTCAAATTATGGCAATATCATCACTCTTATTGAGCTGGGTTTCCACTACCTTACCTGACAATAAGTTGAATTTTCTCAATCATAATGAGGTTCCGAAAGCTACCGCTGCTTACTTTTCCGGTAAAACCATCACATGCTCCAGTGAGACAGCTTCCAGTGAAGAAAGCCATTGCAAGAGAAGGCCACTACTCTTGGGAGTTGGAGCACTAACTACAAGTATACTTCATACAAGTTCCCTCTTGGCTGAAGGAATACCTGACAAGTTCCGAGGTTATGTTGACAAAGAAGATGGGTATTCATATTATTACCCCTCGGATTGGAGGGATTTTGACTTCAGGGCACATGACTCTGCTTTCAAGGACCGATACATGCAACTTCACAATGTTAGGGTGAGATTTATACCCACAGACAAAAGTGACATCCATGATTTGGGTCCATTGGAAGAGGTTGTTCCCTATTTGGTGAGACACAAATTTGCTGCACCTAACCAAGTAGAAAAGATATTCGATATGCAGGAGAAAACTATCGATGGGAAGAGCTATTACACCTTCGAGTATGGCCTCACATCTCCGAACTTCGCTACCACTTCCTTTGCGACCATAGCCATTGGAAATGGGAGATATTACACCCTAATTGTCGGAGCGAATGAGAGACGGTGGAAAAGATACCGCAACCAGCTTAAAATGGTTGCAGACTCTTTCAGAATGCTTGACATTATCTAA

Protein Analysis

304

Amino Acids

34.6

Weight (kDa)

8.78

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 151 - 298 2.6e-43 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 619
AccI GTMKAC 1 cut(s) 409
AciI CCGC 2 cut(s) 294, 859
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 3 cut(s) 148, 259, 662
AcuI CTGAAG 4 cut(s) 102, 174, 456, 508
AcvI CACGTG 2 cut(s) 16, 60
AfiI CCNNNNNNNGG 2 cut(s) 507, 619
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 5 cut(s) 43, 79, 194, 259, 547
AluBI AGCT 6 cut(s) 116, 225, 290, 341, 729, 868
AluI AGCT 6 cut(s) 116, 225, 290, 341, 729, 868
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 4 cut(s) 127, 329, 649, 835
AoxI GGCC 3 cut(s) 10, 371, 748
ApeKI GCWGC 2 cut(s) 296, 668
ApoI RAATTY 3 cut(s) 148, 259, 662
AspS9I GGNCC 2 cut(s) 550, 623
AsuHPI GGTGA 2 cut(s) 592, 664
AvaII GGWCC 2 cut(s) 550, 623
BaeGI GKGCMC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbrPI CACGTG 2 cut(s) 16, 60
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 283, 655
BccI CCATC 4 cut(s) 137, 326, 473, 713
BcoDI GTCTC 4 cut(s) 127, 329, 649, 835
BisI GCNGC 2 cut(s) 297, 669
BlsI GCNGC 2 cut(s) 298, 670
Bme18I GGWCC 2 cut(s) 550, 623
BmgT120I GGNCC 2 cut(s) 550, 623
BmiI GGNNCC 2 cut(s) 282, 624
BpmI CTGGAG 1 cut(s) 313
Bsa29I ATCGAT 1 cut(s) 717
BsaAI YACGTR 2 cut(s) 16, 60
BsaJI CCNNGG 2 cut(s) 457, 501
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 507, 619
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 13, 330, 345
Bse3DI GCAATG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 2 cut(s) 457, 501
BseGI GGATG 2 cut(s) 129, 609
BseLI CCNNNNNNNGG 2 cut(s) 507, 619
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 3 cut(s) 13, 330, 345
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 2 cut(s) 283, 655
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 3 cut(s) 12, 373, 750
BshVI ATCGAT 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 165, 309
BslI CCNNNNNNNGG 2 cut(s) 507, 619
BsmAI GTCTC 4 cut(s) 127, 329, 649, 835
BsmBI CGTCTC 1 cut(s) 835
BsmI GAATGC 1 cut(s) 900
BsnI GGCC 3 cut(s) 12, 373, 750
Bsp1286I GDGCHC 2 cut(s) 397, 532
BspACI CCGC 2 cut(s) 294, 859
BspANI GGCC 3 cut(s) 12, 373, 750
BspDI ATCGAT 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 282, 624
BspQI GCTCTTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 3 cut(s) 13, 330, 345
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 457, 501
BssNAI GTATAC 1 cut(s) 410
Bst1107I GTATAC 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 846
Bst6I CTCTTC 2 cut(s) 627, 719
BstBAI YACGTR 2 cut(s) 16, 60
BstF5I GGATG 2 cut(s) 129, 609
BstMAI GTCTC 4 cut(s) 127, 329, 649, 835
BstMWI GCNNNNNNNGC 2 cut(s) 296, 791
BstNSI RCATGY 2 cut(s) 327, 562
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 283, 655
BstZ17I GTATAC 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 3 cut(s) 12, 373, 750
BsuTUI ATCGAT 1 cut(s) 717
BtsCI GGATG 2 cut(s) 129, 609
BtsIMutI CAGTG 2 cut(s) 337, 352
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 550, 623
ClaI ATCGAT 1 cut(s) 717
CspCI CAANNNNNGTGG 4 cut(s) 363, 398, 763, 798
CviAII CATG 4 cut(s) 324, 533, 559, 614
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 627, 719
EarI CTCTTC 2 cut(s) 627, 719
Eco47I GGWCC 2 cut(s) 550, 623
Eco57I CTGAAG 4 cut(s) 102, 174, 456, 508
Eco72I CACGTG 2 cut(s) 16, 60
EcoRI GAATTC 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 4 cut(s) 327, 536, 562, 617
FatI CATG 4 cut(s) 323, 532, 558, 613
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 297, 669
FokI GGATG 2 cut(s) 116, 596
Fsp4HI GCNGC 2 cut(s) 297, 669
GluI GCNGC 2 cut(s) 297, 669
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 3 cut(s) 12, 373, 750
HapII CCGG 2 cut(s) 165, 309
Hin1II CATG 4 cut(s) 327, 536, 562, 617
HincII GTYRAC 2 cut(s) 73, 469
HindII GTYRAC 2 cut(s) 73, 469
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 2 cut(s) 536, 884
HpaII CCGG 2 cut(s) 165, 309
HphI GGTGA 2 cut(s) 592, 664
Hpy166II GTNNAC 3 cut(s) 73, 410, 469
Hpy188I TCNGA 9 cut(s) 99, 147, 154, 285, 458, 505, 762, 830, 893
Hpy8I GTNNAC 3 cut(s) 73, 410, 469
HpyAV CCTTC 3 cut(s) 363, 431, 748
HpyCH4III ACNGT 1 cut(s) 846
HpyCH4IV ACGT 3 cut(s) 15, 59, 174
HpyCH4V TGCA 6 cut(s) 52, 363, 562, 671, 703, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 791
HpySE526I ACGT 3 cut(s) 15, 59, 174
Hsp92II CATG 4 cut(s) 327, 536, 562, 617
LguI GCTCTTC 1 cut(s) 719
LmnI GCTCC 3 cut(s) 332, 392, 830
Lsp1109I GCAGC 2 cut(s) 283, 655
MaeII ACGT 3 cut(s) 15, 59, 174
MaeIII GTNAC 2 cut(s) 55, 605
MboII GAAGA 4 cut(s) 362, 488, 644, 736
MhlI GDGCHC 2 cut(s) 397, 532
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 5 cut(s) 148, 195, 259, 662, 822
MluNI TGGCCA 1 cut(s) 12
MlyI GAGTC 2 cut(s) 530, 878
MmeI TCCRAC 2 cut(s) 370, 808
MnlI CCTC 9 cut(s) 74, 93, 271, 437, 452, 504, 511, 628, 761
Mox20I TGGCCA 1 cut(s) 12
MscI TGGCCA 1 cut(s) 12
MseI TTAA 1 cut(s) 870
Msp20I TGGCCA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 165, 309
Mva1269I GAATGC 1 cut(s) 900
MwoI GCNNNNNNNGC 2 cut(s) 296, 791
NlaIII CATG 4 cut(s) 327, 536, 562, 617
NlaIV GGNNCC 2 cut(s) 282, 624
NmuCI GTSAC 2 cut(s) 55, 605
NspI RCATGY 2 cut(s) 327, 562
PciSI GCTCTTC 1 cut(s) 719
PctI GAATGC 1 cut(s) 900
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 2 cut(s) 298, 670
PleI GAGTC 2 cut(s) 530, 878
PmaCI CACGTG 2 cut(s) 16, 60
PmlI CACGTG 2 cut(s) 16, 60
PpsI GAGTC 2 cut(s) 530, 878
Ppu21I YACGTR 2 cut(s) 16, 60
PspCI CACGTG 2 cut(s) 16, 60
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 282, 624
PspPI GGNCC 2 cut(s) 550, 623
SapI GCTCTTC 1 cut(s) 719
SaqAI TTAA 1 cut(s) 870
SatI GCNGC 2 cut(s) 297, 669
Sau96I GGNCC 2 cut(s) 550, 623
SchI GAGTC 2 cut(s) 530, 878
SduI GDGCHC 2 cut(s) 397, 532
SinI GGWCC 2 cut(s) 550, 623
Sse9I AATT 5 cut(s) 148, 195, 259, 662, 822
SsiI CCGC 2 cut(s) 294, 859
TaaI ACNGT 1 cut(s) 846
TaiI ACGT 3 cut(s) 18, 62, 177
TaqI TCGA 3 cut(s) 696, 717, 741
TaqII GACCGA 1 cut(s) 567
TasI AATT 5 cut(s) 148, 195, 259, 662, 822
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TscAI CASTG 2 cut(s) 337, 352
TseFI GTSAC 2 cut(s) 55, 605
TseI GCWGC 2 cut(s) 296, 668
Tsp45I GTSAC 2 cut(s) 55, 605
TspDTI ATGAA 3 cut(s) 18, 404, 477
TspRI CASTG 2 cut(s) 337, 352
Van91I CCANNNNNTGG 1 cut(s) 619
VpaK11BI GGWCC 2 cut(s) 550, 623
XapI RAATTY 3 cut(s) 148, 259, 662
XceI RCATGY 2 cut(s) 327, 562
XmiI GTMKAC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.