MD07G1191200.v1.1

psbP-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010319
Physical Location & Seq
Reverse (-)
27111140 .. 27113651
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1191200.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGCAATCTCATCATCACTCTCATTGAGCTGCTGGGTCTCTACTGCCATACCCGACAAGTTTCACTGCACTGAGTTGCCACGAGCTATCACCGCTCATTTTTCTTGCAAATCCATCACGTGCTCAGGAGAGTCAGCCTCCATTGATGAAAGCCATTGCAAGAGGAGGTCTCTTCTGTTAGGGGTTGGAGCACTAACCACAAGTCTACTTCATGCAAATTCCCTCTTTGCTCAAGAAATACCGGAAAAGTTTCGAGCTTTCGTTGACAAAGTAGATGGGTATTCTTATTACTACCCCAACGATTGGAGGGACTTTGAGTTTAGGGCACATGACTCTGCATTCAAGGACAGATACATGCAGCTGCATAATGTTAGAGTGAGATTTTTACCCACAAATAAAACAGACATCCATGATTTGGGTCCAATGGAACAGGTTGTGACCGATCTGGTGAGGCATAAACTTGCTGCACCAAACCAGTATGCAACCATATTTGGCGTCGAGGAGAAAAGCATAGATGGGAAAAATTATTACACCATTGAGTATGGACTTGCATCTCCAAACTTCGCTACCACTTCATTCGCAACCATTGCCATTGGAAACGGGAGATATTACACCCTAATTGTCGGAGCAAACGAGAGACGGTGGAAAAGATACCGCAACCAGCTTAAAGTGGTAGCAGACTCTTTCAGAATGCTGGACATCTGA

Protein Analysis

235

Amino Acids

26.63

Weight (kDa)

8.53

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 83 - 230 7.6e-44 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 303, 415
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 205
AciI CCGC 2 cut(s) 93, 655
AcsI RAATTY 1 cut(s) 217
AcvI CACGTG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 303, 415
AgsI TTSAA 1 cut(s) 343
AluBI AGCT 5 cut(s) 30, 86, 257, 361, 664
AluI AGCT 5 cut(s) 30, 86, 257, 361, 664
Alw21I GWGCWC 2 cut(s) 125, 193
Alw26I GTCTC 3 cut(s) 43, 174, 631
ApeKI GCWGC 4 cut(s) 30, 358, 361, 464
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 82, 460
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 328
BauI CACGAG 1 cut(s) 81
BbrPI CACGTG 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 125, 193
BbvI GCAGC 4 cut(s) 17, 348, 370, 451
BccI CCATC 3 cut(s) 122, 269, 509
BcoDI GTCTC 3 cut(s) 43, 174, 631
BisI GCNGC 4 cut(s) 31, 359, 362, 465
BlsI GCNGC 4 cut(s) 32, 360, 363, 466
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 420
BmsI GCATC 1 cut(s) 560
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 154, 186
Bpu10I CCTNAGC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 2 cut(s) 43, 174
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 415
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 2 cut(s) 154, 585
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 303, 415
BseMI GCAATG 2 cut(s) 154, 585
BseMII CTCAG 2 cut(s) 63, 138
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 2 cut(s) 178, 515
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 4 cut(s) 17, 348, 370, 451
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 2 cut(s) 52, 450
BsiHKAI GWGCWC 2 cut(s) 125, 193
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 303, 415
BsmAI GTCTC 3 cut(s) 43, 174, 631
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 338, 696
Bso31I GGTCTC 2 cut(s) 43, 174
Bsp1286I GDGCHC 3 cut(s) 125, 193, 328
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 2 cut(s) 93, 655
BspCNI CTCAG 2 cut(s) 64, 137
BspLI GGNNCC 1 cut(s) 420
BspTNI GGTCTC 2 cut(s) 43, 174
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 154, 585
BsrI ACTGG 1 cut(s) 475
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 495
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 72, 124
BstF5I GGATG 1 cut(s) 405
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 3 cut(s) 43, 174, 631
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 92, 587
BstNSI RCATGY 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 4 cut(s) 17, 348, 370, 451
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 69
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 484
CviAII CATG 4 cut(s) 212, 329, 355, 410
CviJI RGCY 7 cut(s) 30, 86, 137, 153, 257, 361, 664
CviKI_1 RGCY 7 cut(s) 30, 86, 137, 153, 257, 361, 664
DdeI CTNAG 2 cut(s) 72, 124
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 2 cut(s) 43, 174
Eco47I GGWCC 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 4 cut(s) 215, 332, 358, 413
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 211, 328, 354, 409
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 31, 359, 362, 465
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 31, 359, 362, 465
GluI GCNGC 4 cut(s) 31, 359, 362, 465
GsaI CCCAGC 1 cut(s) 37
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 4 cut(s) 215, 332, 358, 413
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 131, 332, 680
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 82, 460
Hpy166II GTNNAC 2 cut(s) 206, 265
Hpy188I TCNGA 3 cut(s) 626, 689, 704
Hpy188III TCNNGA 2 cut(s) 126, 233
Hpy8I GTNNAC 2 cut(s) 206, 265
Hpy99I CGWCG 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 587
HpyF3I CTNAG 2 cut(s) 72, 124
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 4 cut(s) 215, 332, 358, 413
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 2 cut(s) 188, 626
LpnPI CCDG 8 cut(s) 19, 111, 255, 416, 431, 488, 674, 680
Lsp1109I GCAGC 4 cut(s) 17, 348, 370, 451
LweI GCATC 1 cut(s) 560
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 444
MbiI CCGCTC 1 cut(s) 95
MboI GATC 1 cut(s) 442
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 3 cut(s) 125, 193, 328
MluCI AATT 3 cut(s) 217, 523, 618
MlyI GAGTC 3 cut(s) 140, 326, 674
MmeI TCCRAC 2 cut(s) 166, 604
MnlI CCTC 7 cut(s) 148, 156, 159, 233, 300, 444, 493
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 338, 696
MwoI GCNNNNNNNGC 2 cut(s) 92, 587
NdeII GATC 1 cut(s) 442
NlaIII CATG 4 cut(s) 215, 332, 358, 413
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PctI GAATGC 2 cut(s) 338, 696
PdmI GAANNNNTTC 1 cut(s) 249
PflMI CCANNNNNTGG 2 cut(s) 303, 415
PkrI GCNGC 4 cut(s) 32, 360, 363, 466
PleI GAGTC 3 cut(s) 139, 326, 674
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 3 cut(s) 139, 326, 674
Ppu21I YACGTR 1 cut(s) 120
PspCI CACGTG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 4 cut(s) 31, 359, 362, 465
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 3 cut(s) 140, 326, 674
SduI GDGCHC 3 cut(s) 125, 193, 328
SetI ASST 8 cut(s) 32, 88, 122, 170, 259, 363, 435, 666
SfaNI GCATC 1 cut(s) 560
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 3 cut(s) 217, 523, 618
SsiI CCGC 2 cut(s) 93, 655
TaaI ACNGT 1 cut(s) 642
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 253, 498
TaqII GACCGA 1 cut(s) 455
TasI AATT 3 cut(s) 217, 523, 618
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 2 cut(s) 71, 76
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 30, 358, 361, 464
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 162, 200, 564
TspRI CASTG 2 cut(s) 71, 76
Van91I CCANNNNNTGG 2 cut(s) 303, 415
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.