Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002093.1

Orthogroup ID

OG0010319

Physical Location & Seq

Genomic Coordinates Reverse (-)

137457 .. 142227

Gene Structure 4771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002093.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atggcaatatcatcactctcattgagctgggtttccactaccttacctgacaataagttgaatttgctcaatcataatgaggttccgaaagctaccgctgcttacttttccggtaaaaccatcacctgctccagtgagacagcttccagtgaagaaagctattacaagagaaggccactactcttgggagttggagcactaactacaagtctatttcatacaagttccctcttggctgaaggaatacctgacaagttccgaggttatgttgacaaagaagatggatattcatattattacccctctgattggagggattttgacttcagggcacatgactctgctttcaaggaccgatatatgcaacttcacaatgttagagtgagatttatacccacagacaaaagtgacatccatgatttgggtccattggaagaggttgttccctatttggtgagacacaaatttgctgcaccaaaccaagtagaaaagatattcgacatgcaggagaaaactatagatgggaagagctattacaccttcgagtatggactcacatctccgaacttcgctaccacttcctttgcgaccatagccattggaaatgagaaatctgatctattcaatgttgctaacttcctcataacccacatcagaaagccaaactacaagcttcagtctccaccatccacttacaagttacaatatcagaattctgaagccaaagccggttctcacgttgtcagttctcacattcaaattatggcaatatcatcactctcattgagctgggtttccactaccttacctgacaataagttgaatttgctcaatcataatgaggttccgaaagctaccgctgcttacttttccggtaaaaccatcacctgctccagtgagacagcttccagtgaagaaagctattacaagagaaggccactactcttgggagttggagcactaactacaagtctatttcatacaagttccctcttggctgaaggaatacctgacaagttccgaggttatgttgacaaagaagatggatattcatattattacccctctgattggagggattttgacttcagggcacatgactctgctttcaaggaccgatatatgcaacttcacaatgttagagtgagatttatacccacagacaaaagtgacatccatgatttgggtccattggaagaggttgttccctatttggtgagacacaaatttgctgcaccaaaccaagtagaaaagatattcgacatgcaggagaaaactatagatgggaagagctattacaccttcgagtatggactcacatctccgaacttcgctaccacttcctttgcgaccatagccattggaaatgggagatattacaccctaatcgtcggagcaaatgagagacggtggaaaagataccgcaaccagcttaaaatggttgcagactctttcagaatgcttgacatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

490

Amino Acids

55.89

Weight (kDa)

7.26

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39470 AT2G39470 AT2G39470
fragaria_vesca	FvH4_7g21400 FvH4_7g21400
malus_domestica	MD01G1121500.v1.1 MD07G1191200.v1.1
prunus_persica	Prupe.2G229200_v2.0.a1
pyrus_communis	pycom01g14860
rosa_chinensis	RchiOBHm_Chr1g0365771
rosa_laevigata	RLG00000027401
rosa_multiflora	Rmu_sc0002093.1_g000034 Rmu_sc0004311.1_g000017
rosa_roxburghii	Rroxscaffold_4G00290910
rosa_rugosa	Rorug01G0324000 Rorug01G0324100
rosa_samantha	Rh1AG332800 Rh1BG293700 Rh1CG310600 Rh1DG326100
rosa_wichuraiana	Rw1G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	134, 896
Acc36I	ACCTGC	2 cut(s)	134, 896
AccB7I	CCANNNNNTGG	2 cut(s)	421, 1183
AciI	CCGC	3 cut(s)	96, 858, 1423
AcsI	RAATTY	5 cut(s)	61, 464, 712, 823, 1226
AcuI	CTGAAG	6 cut(s)	258, 310, 659, 738, 1020, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	309, 421, 1071, 1183
AgsI	TTSAA	6 cut(s)	61, 349, 625, 758, 823, 1111
Alw21I	GWGCWC	2 cut(s)	199, 961
Alw26I	GTCTC	6 cut(s)	131, 451, 684, 893, 1213, 1399
AoxI	GGCC	2 cut(s)	173, 935
ApeKI	GCWGC	4 cut(s)	98, 470, 860, 1232
ApoI	RAATTY	5 cut(s)	61, 464, 712, 823, 1226
AspS9I	GGNCC	4 cut(s)	352, 425, 1114, 1187
AsuHPI	GGTGA	4 cut(s)	115, 466, 877, 1228
AvaII	GGWCC	4 cut(s)	352, 425, 1114, 1187
BaeGI	GKGCMC	2 cut(s)	334, 1096
BarI	GAAGNNNNNNTAC	4 cut(s)	518, 550, 1280, 1312
Bbv12I	GWGCWC	2 cut(s)	199, 961
BbvI	GCAGC	4 cut(s)	85, 457, 847, 1219
BccI	CCATC	7 cut(s)	128, 275, 515, 694, 890, 1037, 1277
BcoDI	GTCTC	6 cut(s)	131, 451, 684, 893, 1213, 1399
BfmI	CTRYAG	2 cut(s)	516, 1278
BfuAI	ACCTGC	2 cut(s)	134, 896
BisI	GCNGC	4 cut(s)	99, 471, 861, 1233
BlsI	GCNGC	4 cut(s)	100, 472, 862, 1234
Bme18I	GGWCC	4 cut(s)	352, 425, 1114, 1187
BmgT120I	GGNCC	4 cut(s)	352, 425, 1114, 1187
BmiI	GGNNCC	4 cut(s)	84, 426, 846, 1188
BpmI	CTGGAG	2 cut(s)	115, 877
BsaJI	CCNNGG	2 cut(s)	259, 1021
BsaWI	WCCGGW	2 cut(s)	110, 872
Bsc4I	CCNNNNNNNGG	4 cut(s)	309, 421, 1071, 1183
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	4 cut(s)	132, 147, 894, 909
BseDI	CCNNGG	2 cut(s)	259, 1021
BseGI	GGATG	3 cut(s)	411, 686, 1173
BseLI	CCNNNNNNNGG	4 cut(s)	309, 421, 1071, 1183
BseNI	ACTGG	4 cut(s)	132, 147, 894, 909
BseSI	GKGCMC	2 cut(s)	334, 1096
BseXI	GCAGC	4 cut(s)	85, 457, 847, 1219
BseYI	CCCAGC	2 cut(s)	27, 789
BsgI	GTGCAG	2 cut(s)	456, 1218
BshFI	GGCC	2 cut(s)	175, 937
BsiHKAI	GWGCWC	2 cut(s)	199, 961
BsiSI	CCGG	3 cut(s)	111, 729, 873
BslI	CCNNNNNNNGG	4 cut(s)	309, 421, 1071, 1183
BsmAI	GTCTC	6 cut(s)	131, 451, 684, 893, 1213, 1399
BsmBI	CGTCTC	1 cut(s)	1399
BsmI	GAATGC	1 cut(s)	1464
BsnI	GGCC	2 cut(s)	175, 937
Bsp1286I	GDGCHC	4 cut(s)	199, 334, 961, 1096
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	3 cut(s)	96, 858, 1423
BspANI	GGCC	2 cut(s)	175, 937
BspLI	GGNNCC	4 cut(s)	84, 426, 846, 1188
BspMI	ACCTGC	2 cut(s)	134, 896
BspQI	GCTCTTC	2 cut(s)	521, 1283
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	4 cut(s)	132, 147, 894, 909
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	259, 1021
BssMI	GATC	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	1410
Bst6I	CTCTTC	4 cut(s)	429, 521, 1191, 1283
BstF5I	GGATG	3 cut(s)	411, 686, 1173
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	6 cut(s)	131, 451, 684, 893, 1213, 1399
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 593, 860, 1355
BstNSI	RCATGY	2 cut(s)	505, 1267
BstSFI	CTRYAG	2 cut(s)	516, 1278
BstSLI	GKGCMC	2 cut(s)	334, 1096
BstV1I	GCAGC	4 cut(s)	85, 457, 847, 1219
BsuRI	GGCC	2 cut(s)	175, 937
BtsCI	GGATG	3 cut(s)	411, 686, 1173
BtsIMutI	CAGTG	4 cut(s)	139, 154, 901, 916
BveI	ACCTGC	2 cut(s)	134, 896
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	4 cut(s)	352, 425, 1114, 1187
CspCI	CAANNNNNGTGG	8 cut(s)	165, 200, 565, 600, 927, 962, 1327, 1362
CviAII	CATG	6 cut(s)	335, 416, 502, 1097, 1178, 1264
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	429, 521, 1191, 1283
EarI	CTCTTC	4 cut(s)	429, 521, 1191, 1283
Eco47I	GGWCC	4 cut(s)	352, 425, 1114, 1187
Eco57I	CTGAAG	6 cut(s)	258, 310, 659, 738, 1020, 1072
EcoRI	GAATTC	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	1399
FaeI	CATG	6 cut(s)	338, 419, 505, 1100, 1181, 1267
FatI	CATG	6 cut(s)	334, 415, 501, 1096, 1177, 1263
Fnu4HI	GCNGC	4 cut(s)	99, 471, 861, 1233
FokI	GGATG	3 cut(s)	398, 673, 1160
Fsp4HI	GCNGC	4 cut(s)	99, 471, 861, 1233
GluI	GCNGC	4 cut(s)	99, 471, 861, 1233
GsaI	CCCAGC	2 cut(s)	31, 793
GsuI	CTGGAG	2 cut(s)	115, 877
HaeIII	GGCC	2 cut(s)	175, 937
HapII	CCGG	3 cut(s)	111, 729, 873
Hin1II	CATG	6 cut(s)	338, 419, 505, 1100, 1181, 1267
HincII	GTYRAC	2 cut(s)	271, 1033
HindII	GTYRAC	2 cut(s)	271, 1033
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	5 cut(s)	338, 552, 1100, 1314, 1448
HpaII	CCGG	3 cut(s)	111, 729, 873
HphI	GGTGA	4 cut(s)	115, 466, 877, 1228
Hpy166II	GTNNAC	2 cut(s)	271, 1033
Hpy8I	GTNNAC	2 cut(s)	271, 1033
Hpy99I	CGWCG	1 cut(s)	1394
HpyAV	CCTTC	6 cut(s)	165, 233, 550, 927, 995, 1312
HpyCH4III	ACNGT	1 cut(s)	1410
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	7 cut(s)	364, 473, 505, 1126, 1235, 1267, 1445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 593, 860, 1355
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	6 cut(s)	338, 419, 505, 1100, 1181, 1267
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	2 cut(s)	521, 1283
LmnI	GCTCC	5 cut(s)	134, 194, 896, 956, 1394
Lsp1109I	GCAGC	4 cut(s)	85, 457, 847, 1219
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	407, 699, 1169
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	8 cut(s)	164, 290, 446, 538, 926, 1052, 1208, 1300
MhlI	GDGCHC	4 cut(s)	199, 334, 961, 1096
MluCI	AATT	6 cut(s)	61, 464, 712, 759, 823, 1226
MlyI	GAGTC	5 cut(s)	332, 546, 1094, 1308, 1442
MmeI	TCCRAC	3 cut(s)	172, 934, 1372
MseI	TTAA	1 cut(s)	1434
MspA1I	CMGCKG	2 cut(s)	98, 860
MspI	CCGG	3 cut(s)	111, 729, 873
Mva1269I	GAATGC	1 cut(s)	1464
MwoI	GCNNNNNNNGC	4 cut(s)	98, 593, 860, 1355
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	6 cut(s)	338, 419, 505, 1100, 1181, 1267
NlaIV	GGNNCC	4 cut(s)	84, 426, 846, 1188
NmuCI	GTSAC	2 cut(s)	407, 1169
NspI	RCATGY	2 cut(s)	505, 1267
PaqCI	CACCTGC	2 cut(s)	134, 896
PciSI	GCTCTTC	2 cut(s)	521, 1283
PctI	GAATGC	1 cut(s)	1464
PflMI	CCANNNNNTGG	2 cut(s)	421, 1183
PkrI	GCNGC	4 cut(s)	100, 472, 862, 1234
PleI	GAGTC	5 cut(s)	332, 546, 1094, 1308, 1442
PpsI	GAGTC	5 cut(s)	332, 546, 1094, 1308, 1442
PspFI	CCCAGC	2 cut(s)	27, 789
PspN4I	GGNNCC	4 cut(s)	84, 426, 846, 1188
PspPI	GGNCC	4 cut(s)	352, 425, 1114, 1187
SapI	GCTCTTC	2 cut(s)	521, 1283
SaqAI	TTAA	1 cut(s)	1434
SatI	GCNGC	4 cut(s)	99, 471, 861, 1233
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	4 cut(s)	352, 425, 1114, 1187
SchI	GAGTC	5 cut(s)	332, 546, 1094, 1308, 1442
SduI	GDGCHC	4 cut(s)	199, 334, 961, 1096
SfcI	CTRYAG	2 cut(s)	516, 1278
SinI	GGWCC	4 cut(s)	352, 425, 1114, 1187
Sse9I	AATT	6 cut(s)	61, 464, 712, 759, 823, 1226
SsiI	CCGC	3 cut(s)	96, 858, 1423
TaaI	ACNGT	1 cut(s)	1410
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	4 cut(s)	498, 543, 1260, 1305
TaqII	GACCGA	2 cut(s)	369, 1131
TasI	AATT	6 cut(s)	61, 464, 712, 759, 823, 1226
Tru1I	TTAA	1 cut(s)	1434
Tru9I	TTAA	1 cut(s)	1434
TscAI	CASTG	4 cut(s)	139, 154, 901, 916
TseFI	GTSAC	2 cut(s)	407, 1169
TseI	GCWGC	4 cut(s)	98, 470, 860, 1232
Tsp45I	GTSAC	2 cut(s)	407, 1169
TspDTI	ATGAA	4 cut(s)	206, 279, 968, 1041
TspRI	CASTG	4 cut(s)	139, 154, 901, 916
Van91I	CCANNNNNTGG	2 cut(s)	421, 1183
VpaK11BI	GGWCC	4 cut(s)	352, 425, 1114, 1187
XapI	RAATTY	5 cut(s)	61, 464, 712, 823, 1226
XceI	RCATGY	2 cut(s)	505, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.