Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004311.1

Orthogroup ID

OG0010319

Physical Location & Seq

Genomic Coordinates Forward (+)

53128 .. 56180

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004311.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atgcaagtcacgtgcctctctcgtgtaatagcatcccagtcaactccaagcctcataacccacatcagaaagccaaactacaagcttcagtctccaccatccacttacaagttacaatatcagaattctgaagccaaagccggttctcacgttgtcagttctcacattcaaattatggcaatatcatcactctcattgagctgggtttccactaccttacctgacaataagttgaatttgctcaatcataatgaggttccgaaagctaccgctgcttacttttccggtaaaaccatcacctgctccagtgagacagcttccagtgaagaaagctattacaagagaaggccactactcttgggagttggagcactaactacaagtctatttcatacaagttccctcttggctgaaggaatacctgacaagttccgaggttatgttgacaaagaagatggatattcatattattacccctctgattggagggattttgacttcagggcacatgactctgctttcaaggaccgatatatgcaacttcacaatgttagagtgagatttatacccacagacaaaagtgacatccatgatttgggtccattggaagaggttgttccctatttggtgagacacaaatttgctgcaccaaaccaagtagaaaagatattcgacatgcaggagaaaactatagatgggaagagctattacaccttcgagtatggactcacatctccgaacttcgctaccacttcctttgcgaccatagccattggaaatgggagatattacaccctaatcgtcggagcaaatgagagacggtggaaaagataccgcaaccagcttaaaatgaatggtggggattctaacagaaaaaaaaaagagctctctcgtccgagaacacgaaaacaagagcaaaagctctccgatcctttccttcctccaccagtgatcaatcgacgacaaacaaccttctgtggcttcgtctcagccttgcgaagctacctgcggcggtcttgggtcacggcacagccggaagctgcggtgatgaggtcggatgcgtccagccccgatttggattccaaacatggtagctcgagctaccgatcacgagaccttctcaaactccatccacaggttcgtatcaaccatctgaaactcccagaagcaccattgcacggcggcgctgtcgctggaggcggctggagctcacaaccccgatcggagcgaacaacggagcaaagaatcctgatatctcgagctacaagaagtcgttttgagtgtttcttggactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

432

Amino Acids

49.17

Weight (kDa)

9.69

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39470 AT2G39470 AT2G39470
fragaria_vesca	FvH4_7g21400 FvH4_7g21400
malus_domestica	MD01G1121500.v1.1 MD07G1191200.v1.1
prunus_persica	Prupe.2G229200_v2.0.a1
pyrus_communis	pycom01g14860
rosa_chinensis	RchiOBHm_Chr1g0365771
rosa_laevigata	RLG00000027401
rosa_multiflora	Rmu_sc0002093.1_g000034 Rmu_sc0004311.1_g000017
rosa_roxburghii	Rroxscaffold_4G00290910
rosa_rugosa	Rorug01G0324000 Rorug01G0324100
rosa_samantha	Rh1AG332800 Rh1BG293700 Rh1CG310600 Rh1DG326100
rosa_wichuraiana	Rw1G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	2 cut(s)	308, 1014
AccB7I	CCANNNNNTGG	1 cut(s)	595
AciI	CCGC	7 cut(s)	270, 835, 1009, 1012, 1043, 1182, 1200
AclWI	GGATC	1 cut(s)	923
AcsI	RAATTY	3 cut(s)	124, 235, 638
AcuI	CTGAAG	4 cut(s)	71, 150, 432, 484
AcvI	CACGTG	1 cut(s)	12
AfiI	CCNNNNNNNGG	5 cut(s)	483, 595, 1075, 1135, 1178
AgsI	TTSAA	3 cut(s)	170, 235, 523
Alw21I	GWGCWC	3 cut(s)	373, 888, 1211
Alw26I	GTCTC	6 cut(s)	96, 305, 625, 811, 991, 1107
AlwI	GGATC	1 cut(s)	923
Ama87I	CYCGRG	2 cut(s)	1096, 1257
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	272, 644, 1040
ApoI	RAATTY	3 cut(s)	124, 235, 638
AspLEI	GCGC	1 cut(s)	1187
AspS9I	GGNCC	2 cut(s)	526, 599
AsuHPI	GGTGA	3 cut(s)	289, 640, 1057
AvaI	CYCGRG	2 cut(s)	1096, 1257
AvaII	GGWCC	2 cut(s)	526, 599
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	888, 1211
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BauI	CACGAG	2 cut(s)	21, 1110
BbrPI	CACGTG	1 cut(s)	12
Bbv12I	GWGCWC	3 cut(s)	373, 888, 1211
BbvI	GCAGC	3 cut(s)	259, 631, 1027
BccI	CCATC	6 cut(s)	106, 302, 449, 689, 1137, 1158
BceAI	ACGGC	2 cut(s)	1041, 1195
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	6 cut(s)	96, 305, 625, 811, 991, 1107
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	1188
BfuAI	ACCTGC	2 cut(s)	308, 1014
BisI	GCNGC	6 cut(s)	273, 645, 1010, 1041, 1183, 1201
BlsI	GCNGC	6 cut(s)	274, 646, 1011, 1042, 1184, 1202
Bme18I	GGWCC	2 cut(s)	526, 599
BmeT110I	CYCGRG	2 cut(s)	1096, 1257
BmgT120I	GGNCC	2 cut(s)	526, 599
BmiI	GGNNCC	2 cut(s)	258, 600
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	41, 1048
BmuI	ACTGGG	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	1104, 1136
BpmI	CTGGAG	3 cut(s)	289, 1215, 1225
BsaAI	YACGTR	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	1107
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	5 cut(s)	483, 595, 1075, 1135, 1178
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	5 cut(s)	37, 306, 321, 947, 1298
Bse3DI	GCAATG	1 cut(s)	1172
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	5 cut(s)	32, 98, 585, 1063, 1129
BseLI	CCNNNNNNNGG	5 cut(s)	483, 595, 1075, 1135, 1178
BseMI	GCAATG	1 cut(s)	1172
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	5 cut(s)	37, 306, 321, 947, 1298
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	259, 631, 1027
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	1223
BshFI	GGCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	1223
BsiHKAI	GWGCWC	3 cut(s)	373, 888, 1211
BsiHKCI	CYCGRG	2 cut(s)	1096, 1257
BsiSI	CCGG	3 cut(s)	141, 285, 1034
BslI	CCNNNNNNNGG	5 cut(s)	483, 595, 1075, 1135, 1178
BsmAI	GTCTC	6 cut(s)	96, 305, 625, 811, 991, 1107
BsmBI	CGTCTC	2 cut(s)	811, 991
BsnI	GGCC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	1107
BsoBI	CYCGRG	2 cut(s)	1096, 1257
Bsp1286I	GDGCHC	4 cut(s)	373, 508, 888, 1211
Bsp143I	GATC	4 cut(s)	928, 951, 1106, 1220
BspACI	CCGC	7 cut(s)	270, 835, 1009, 1012, 1043, 1182, 1200
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	1001
BspLI	GGNNCC	2 cut(s)	258, 600
BspMI	ACCTGC	2 cut(s)	308, 1014
BspPI	GGATC	1 cut(s)	923
BspQI	GCTCTTC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	1107
BsrDI	GCAATG	1 cut(s)	1172
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	5 cut(s)	37, 306, 321, 947, 1298
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	4 cut(s)	928, 951, 1106, 1220
BssSI	CACGAG	2 cut(s)	21, 1110
Bst2BI	CACGAG	2 cut(s)	21, 1110
Bst4CI	ACNGT	1 cut(s)	822
Bst6I	CTCTTC	2 cut(s)	603, 695
BstBAI	YACGTR	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	988
BstF5I	GGATG	5 cut(s)	32, 98, 585, 1063, 1129
BstH2I	RGCGCY	1 cut(s)	1188
BstHHI	GCGC	1 cut(s)	1187
BstKTI	GATC	4 cut(s)	931, 954, 1109, 1223
BstMAI	GTCTC	6 cut(s)	96, 305, 625, 811, 991, 1107
BstMBI	GATC	4 cut(s)	928, 951, 1106, 1220
BstMCI	CGRYCG	1 cut(s)	1223
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 767, 1206
BstNSI	RCATGY	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	3 cut(s)	259, 631, 1027
BsuRI	GGCC	1 cut(s)	349
BtsCI	GGATG	5 cut(s)	32, 98, 585, 1063, 1129
BtsIMutI	CAGTG	3 cut(s)	313, 328, 954
BveI	ACCTGC	2 cut(s)	308, 1014
CfoI	GCGC	1 cut(s)	1187
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	526, 599
CseI	GACGC	1 cut(s)	1050
CspCI	CAANNNNNGTGG	4 cut(s)	339, 374, 739, 774
CviAII	CATG	4 cut(s)	509, 590, 676, 1088
DdeI	CTNAG	1 cut(s)	988
DpnI	GATC	4 cut(s)	930, 953, 1108, 1222
DpnII	GATC	4 cut(s)	928, 951, 1106, 1220
Eam1104I	CTCTTC	2 cut(s)	603, 695
EarI	CTCTTC	2 cut(s)	603, 695
Ecl136II	GAGCTC	2 cut(s)	886, 1209
Eco24I	GRGCYC	2 cut(s)	888, 1211
Eco31I	GGTCTC	1 cut(s)	1107
Eco32I	GATATC	1 cut(s)	1254
Eco47I	GGWCC	2 cut(s)	526, 599
Eco53kI	GAGCTC	2 cut(s)	886, 1209
Eco57I	CTGAAG	4 cut(s)	71, 150, 432, 484
Eco72I	CACGTG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	1096, 1257
EcoICRI	GAGCTC	2 cut(s)	886, 1209
EcoRI	GAATTC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	1254
EcoT38I	GRGCYC	2 cut(s)	888, 1211
Esp3I	CGTCTC	2 cut(s)	811, 991
FaeI	CATG	4 cut(s)	512, 593, 679, 1091
FatI	CATG	4 cut(s)	508, 589, 675, 1087
FbaI	TGATCA	1 cut(s)	951
Fnu4HI	GCNGC	6 cut(s)	273, 645, 1010, 1041, 1183, 1201
FokI	GGATG	5 cut(s)	19, 85, 572, 1070, 1116
FriOI	GRGCYC	2 cut(s)	888, 1211
Fsp4HI	GCNGC	6 cut(s)	273, 645, 1010, 1041, 1183, 1201
GlaI	GCGC	1 cut(s)	1186
GluI	GCNGC	6 cut(s)	273, 645, 1010, 1041, 1183, 1201
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	3 cut(s)	289, 1215, 1225
HaeII	RGCGCY	1 cut(s)	1188
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	3 cut(s)	141, 285, 1034
HgaI	GACGC	1 cut(s)	1050
HhaI	GCGC	1 cut(s)	1187
Hin1II	CATG	4 cut(s)	512, 593, 679, 1091
Hin6I	GCGC	1 cut(s)	1185
HinP1I	GCGC	1 cut(s)	1185
HincII	GTYRAC	2 cut(s)	42, 445
HindII	GTYRAC	2 cut(s)	42, 445
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	512, 726, 863, 1079, 1245
HpaII	CCGG	3 cut(s)	141, 285, 1034
HphI	GGTGA	3 cut(s)	289, 640, 1057
Hpy166II	GTNNAC	2 cut(s)	42, 445
Hpy188III	TCNNGA	3 cut(s)	1110, 1249, 1257
Hpy8I	GTNNAC	2 cut(s)	42, 445
Hpy99I	CGWCG	2 cut(s)	806, 963
HpyAV	CCTTC	6 cut(s)	339, 407, 724, 947, 982, 1127
HpyCH4III	ACNGT	1 cut(s)	822
HpyCH4IV	ACGT	2 cut(s)	11, 150
HpyCH4V	TGCA	5 cut(s)	4, 538, 647, 679, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 767, 1206
HpyF3I	CTNAG	1 cut(s)	988
HpySE526I	ACGT	2 cut(s)	11, 150
Hsp92II	CATG	4 cut(s)	512, 593, 679, 1091
HspAI	GCGC	1 cut(s)	1185
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	4 cut(s)	928, 951, 1106, 1220
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	6 cut(s)	308, 368, 806, 1206, 1225, 1237
Lsp1109I	GCAGC	3 cut(s)	259, 631, 1027
LweI	GCATC	2 cut(s)	41, 1048
MaeII	ACGT	2 cut(s)	11, 150
MaeIII	GTNAC	4 cut(s)	7, 111, 581, 1021
MalI	GATC	4 cut(s)	930, 953, 1108, 1222
MboI	GATC	4 cut(s)	928, 951, 1106, 1220
MboII	GAAGA	4 cut(s)	338, 464, 620, 712
MhlI	GDGCHC	4 cut(s)	373, 508, 888, 1211
MluCI	AATT	4 cut(s)	124, 171, 235, 638
MlyI	GAGTC	2 cut(s)	506, 720
MmeI	TCCRAC	3 cut(s)	346, 784, 1035
MseI	TTAA	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	3 cut(s)	141, 285, 1034
MwoI	GCNNNNNNNGC	3 cut(s)	272, 767, 1206
NdeII	GATC	4 cut(s)	928, 951, 1106, 1220
NlaIII	CATG	4 cut(s)	512, 593, 679, 1091
NlaIV	GGNNCC	2 cut(s)	258, 600
NmuCI	GTSAC	3 cut(s)	7, 581, 1021
NspI	RCATGY	1 cut(s)	679
PaeR7I	CTCGAG	2 cut(s)	1096, 1257
PaqCI	CACCTGC	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	863, 1079, 1245
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	6 cut(s)	274, 646, 1011, 1042, 1184, 1202
Ple19I	CGATCG	1 cut(s)	1223
PleI	GAGTC	2 cut(s)	506, 720
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	2 cut(s)	506, 720
Ppu21I	YACGTR	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	888, 1211
PspCI	CACGTG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	258, 600
PspPI	GGNCC	2 cut(s)	526, 599
PspXI	VCTCGAGB	1 cut(s)	1096
PvuI	CGATCG	1 cut(s)	1223
SacI	GAGCTC	2 cut(s)	888, 1211
SapI	GCTCTTC	1 cut(s)	695
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	6 cut(s)	273, 645, 1010, 1041, 1183, 1201
Sau3AI	GATC	4 cut(s)	928, 951, 1106, 1220
Sau96I	GGNCC	2 cut(s)	526, 599
SchI	GAGTC	2 cut(s)	506, 720
SduI	GDGCHC	4 cut(s)	373, 508, 888, 1211
SfaNI	GCATC	2 cut(s)	41, 1048
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	2 cut(s)	1096, 1257
SinI	GGWCC	2 cut(s)	526, 599
SlaI	CTCGAG	2 cut(s)	1096, 1257
SmlI	CTYRAG	2 cut(s)	1096, 1257
SmoI	CTYRAG	2 cut(s)	1096, 1257
Sse9I	AATT	4 cut(s)	124, 171, 235, 638
SsiI	CCGC	7 cut(s)	270, 835, 1009, 1012, 1043, 1182, 1200
SstI	GAGCTC	2 cut(s)	888, 1211
TaaI	ACNGT	1 cut(s)	822
TaiI	ACGT	2 cut(s)	14, 153
TaqI	TCGA	5 cut(s)	672, 717, 958, 1097, 1258
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	124, 171, 235, 638
TauI	GCSGC	3 cut(s)	1012, 1185, 1203
TfiI	GAWTC	3 cut(s)	863, 1079, 1245
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	3 cut(s)	313, 328, 954
TseFI	GTSAC	3 cut(s)	7, 581, 1021
TseI	GCWGC	3 cut(s)	272, 644, 1040
Tsp45I	GTSAC	3 cut(s)	7, 581, 1021
TspDTI	ATGAA	3 cut(s)	380, 453, 866
TspGWI	ACGGA	1 cut(s)	1250
TspRI	CASTG	3 cut(s)	313, 328, 954
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	526, 599
XapI	RAATTY	3 cut(s)	124, 235, 638
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XhoI	CTCGAG	2 cut(s)	1096, 1257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.