Rh1CG310600

psbP-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010319
Physical Location & Seq
Reverse (-)
58460336 .. 58462723
2388 bp
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UTR
Exon/CDS
Intron
Rh1CG310600.1

Sequence Viewer

Length: 624 bp
ATGGCAATATCATCACTCTCATTGAGCTGGGTTTCCACTACCTTACCTGACAATAAGTTGAATTTGCTCAATCATAATGAGGTTCCGAAAGCTACCGCTGCTTACTTTTCCGGTAAAACCATCACATGCTCCAGTGAGACAGCTTCCAGTGAAGAAAGCTATTACAAGAGAAGGCCACTACTCTTGGGAGTTGGAGCACTAACTACAAGTCTACTTCATACAAGTTCCCTCTTGGCTGAAGGAATACCTGACAAGTTCCGAGGTTATGTTGACAAAGAAGATGGCTATTCATATTATTACCCCTCTGATTGGAGGGATTTTGACTTCAGGGCACATGACTCTGCTTTCAAGGACCGATATATGCAACTTCACAATGTTAGAGTGAGATTTATACCCACAGACAAAAGTGACATCCATGATTTGGGTCCATTGGAAGAGGTTGTTCCCTATTTGGTGAGACACAAATTTGCTGCACCAAACCAAGTAGAAAAGATATTCGACATGAAGGAGAAAACTATAGATGGGAAGAGCTATTACACCTTCGAGTATGGACTCACATCTCCGAACTTCGCTACCACTTCCTTTGCAACCATAGCCATTGGAAATGGTAAGTATCTTCACTAA

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

6.38

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 85 - 205 2.8e-31 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 421
AccI GTMKAC 1 cut(s) 211
AciI CCGC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 61, 464
AcuI CTGAAG 2 cut(s) 258, 310
AfiI CCNNNNNNNGG 2 cut(s) 309, 421
AgsI TTSAA 2 cut(s) 61, 349
AluBI AGCT 5 cut(s) 27, 92, 143, 159, 531
AluI AGCT 5 cut(s) 27, 92, 143, 159, 531
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 131, 451
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 98, 470
ApoI RAATTY 2 cut(s) 61, 464
AspS9I GGNCC 2 cut(s) 352, 425
AsuHPI GGTGA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 352, 425
BaeGI GKGCMC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 85, 457
BccI CCATC 3 cut(s) 128, 275, 515
BcoDI GTCTC 2 cut(s) 131, 451
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 2 cut(s) 99, 471
BlsI GCNGC 2 cut(s) 100, 472
Bme18I GGWCC 2 cut(s) 352, 425
BmgT120I GGNCC 2 cut(s) 352, 425
BmiI GGNNCC 2 cut(s) 84, 426
BpmI CTGGAG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 421
Bse1I ACTGG 2 cut(s) 132, 147
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 309, 421
BseNI ACTGG 2 cut(s) 132, 147
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 2 cut(s) 85, 457
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 309, 421
BsmAI GTCTC 2 cut(s) 131, 451
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 199, 334
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 84, 426
BspQI GCTCTTC 1 cut(s) 521
BsrI ACTGG 2 cut(s) 132, 147
BssECI CCNNGG 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 429, 521
BstF5I GGATG 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 131, 451
BstMWI GCNNNNNNNGC 2 cut(s) 98, 593
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 85, 457
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 139, 154
Cfr13I GGNCC 2 cut(s) 352, 425
CspCI CAANNNNNGTGG 4 cut(s) 165, 200, 565, 600
CviAII CATG 4 cut(s) 126, 335, 416, 502
CviJI RGCY 9 cut(s) 27, 92, 143, 159, 175, 236, 285, 531, 596
CviKI_1 RGCY 9 cut(s) 27, 92, 143, 159, 175, 236, 285, 531, 596
Eam1104I CTCTTC 2 cut(s) 429, 521
EarI CTCTTC 2 cut(s) 429, 521
Eco47I GGWCC 2 cut(s) 352, 425
Eco57I CTGAAG 2 cut(s) 258, 310
FaeI CATG 4 cut(s) 129, 338, 419, 505
FatI CATG 4 cut(s) 125, 334, 415, 501
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 99, 471
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 99, 471
GluI GCNGC 2 cut(s) 99, 471
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 111
Hin1II CATG 4 cut(s) 129, 338, 419, 505
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 338, 552
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 212, 271
Hpy188I TCNGA 4 cut(s) 87, 260, 307, 564
Hpy8I GTNNAC 2 cut(s) 212, 271
HpyAV CCTTC 4 cut(s) 165, 233, 499, 550
HpyCH4V TGCA 3 cut(s) 364, 473, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 593
Hsp92II CATG 4 cut(s) 129, 338, 419, 505
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 2 cut(s) 134, 194
LpnPI CCDG 7 cut(s) 13, 60, 124, 145, 160, 261, 313
Lsp1109I GCAGC 2 cut(s) 85, 457
MaeIII GTNAC 1 cut(s) 407
MboII GAAGA 5 cut(s) 164, 290, 446, 538, 608
MhlI GDGCHC 2 cut(s) 199, 334
MluCI AATT 2 cut(s) 61, 464
MlyI GAGTC 2 cut(s) 332, 546
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 6 cut(s) 73, 239, 254, 306, 313, 430
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 98, 593
NlaIII CATG 4 cut(s) 129, 338, 419, 505
NlaIV GGNNCC 2 cut(s) 84, 426
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 2 cut(s) 100, 472
PleI GAGTC 2 cut(s) 332, 546
PpsI GAGTC 2 cut(s) 332, 546
PspFI CCCAGC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 84, 426
PspPI GGNCC 2 cut(s) 352, 425
SapI GCTCTTC 1 cut(s) 521
SatI GCNGC 2 cut(s) 99, 471
Sau96I GGNCC 2 cut(s) 352, 425
SchI GAGTC 2 cut(s) 332, 546
SduI GDGCHC 2 cut(s) 199, 334
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 352, 425
Sse9I AATT 2 cut(s) 61, 464
SsiI CCGC 1 cut(s) 96
TaqI TCGA 2 cut(s) 498, 543
TaqII GACCGA 1 cut(s) 369
TasI AATT 2 cut(s) 61, 464
TscAI CASTG 2 cut(s) 139, 154
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 98, 470
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 206, 279, 518
TspRI CASTG 2 cut(s) 139, 154
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 2 cut(s) 352, 425
XapI RAATTY 2 cut(s) 61, 464
XceI RCATGY 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.