Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010319

Physical Location & Seq

Genomic Coordinates Reverse (-)

25445747 .. 25447856

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAATTTCGTCATCTCTCTCACTGAGCTGGGTCTCCACTACCATTCCTGACAAGTTTCAATTAACTCTGCCTAATCACAACAATGAGTTGCCACGAGCTACCACCACTGCTTATTTTTCTTCCAAAAACATCACATGCTCAGCAGAGCCAGCCTCCATTGATGAAAGCCATTGCAAGAGAAGGCCGCTACTCTTAGGAGTGGGAGCACTAACTACAAGTCTACTTCAAGCAACCTCCCTCTTTGCTGAAGAAATACCGGAAAAGTACAGAGCTTTTGTTGACAAAGTAGATGGGTATTCTTATTACTACCCCTATGATTGGAGGGATTTTGAGTTCAGGGCACATGACTCTGCCTTCAAGGACAGATATATGCAACTGCATAATGTTAGAGTGAGATTTTTACCAACGAATAAAACAGACATTCACGAATTGGGTCCAATGGAAGAGGTTGTTTCCGATTTGGTTAGATATAAACTTGCTTCACCCAACCAGTATGCAACTATATTTGGCATGCAGGAGAGAAACATAGATGGGAAAAACTATTACACCGTCGAGTATGGACTTCAAACTCCAAACTTTGCTACCAATTCCTTTGCAACCGTAGCCATTGGAAATGGGAGATTTTACACCCTGATTGTGGTAGCAAATGAAAGGCGGTGGAAAAGATACCGCAACCAGCTTAAAGTGGTGGCAGACTCTTTCAGGATGCTTGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

241

Amino Acids

27.66

Weight (kDa)

8.41

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39470 AT2G39470 AT2G39470
fragaria_vesca	FvH4_7g21400 FvH4_7g21400
malus_domestica	MD01G1121500.v1.1 MD07G1191200.v1.1
prunus_persica	Prupe.2G229200_v2.0.a1
pyrus_communis	pycom01g14860
rosa_chinensis	RchiOBHm_Chr1g0365771
rosa_laevigata	RLG00000027401
rosa_multiflora	Rmu_sc0002093.1_g000034 Rmu_sc0004311.1_g000017
rosa_roxburghii	Rroxscaffold_4G00290910
rosa_rugosa	Rorug01G0324000 Rorug01G0324100
rosa_samantha	Rh1AG332800 Rh1BG293700 Rh1CG310600 Rh1DG326100
rosa_wichuraiana	Rw1G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	3 cut(s)	188, 658, 673
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	321, 640
AgsI	TTSAA	4 cut(s)	62, 230, 361, 569
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	4 cut(s)	30, 101, 275, 682
AluI	AGCT	4 cut(s)	30, 101, 275, 682
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	2 cut(s)	287, 527
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	438
BmsI	GCATC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 640
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	321, 640
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	17, 156
BseNI	ACTGG	1 cut(s)	493
BseSI	GKGCMC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	321, 640
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	211, 346
Bsp1720I	GCTNAGC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	188, 658, 673
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	18, 155
BspLI	GGNNCC	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	493
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	553, 604
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	153, 515
BstDEI	CTNAG	3 cut(s)	26, 142, 196
BstF5I	GGATG	1 cut(s)	714
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 605
BstNSI	RCATGY	2 cut(s)	141, 517
BstSLI	GKGCMC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	714
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	23, 108
Cac8I	GCNNGC	2 cut(s)	153, 515
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	138, 347, 514
CviJI	RGCY	9 cut(s)	30, 101, 151, 155, 171, 187, 275, 608, 682
CviKI_1	RGCY	9 cut(s)	30, 101, 151, 155, 171, 187, 275, 608, 682
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	26, 142, 196
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	270
FaeI	CATG	3 cut(s)	141, 350, 517
FatI	CATG	3 cut(s)	137, 346, 513
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	3 cut(s)	141, 350, 517
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	350, 698
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	2 cut(s)	224, 283
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	3 cut(s)	50, 428, 706
Hpy8I	GTNNAC	2 cut(s)	224, 283
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	177, 367
HpyCH4III	ACNGT	2 cut(s)	553, 604
HpyCH4V	TGCA	6 cut(s)	177, 376, 382, 500, 517, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 605
HpyF3I	CTNAG	3 cut(s)	26, 142, 196
Hsp92II	CATG	3 cut(s)	141, 350, 517
LmnI	GCTCC	1 cut(s)	206
LweI	GCATC	1 cut(s)	699
MboII	GAAGA	3 cut(s)	114, 263, 458
MhlI	GDGCHC	2 cut(s)	211, 346
MluCI	AATT	4 cut(s)	6, 62, 431, 589
MlyI	GAGTC	2 cut(s)	344, 692
MnlI	CCTC	5 cut(s)	166, 247, 251, 318, 442
MseI	TTAA	2 cut(s)	65, 684
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	152, 605
NlaIII	CATG	3 cut(s)	141, 350, 517
NlaIV	GGNNCC	1 cut(s)	438
NspI	RCATGY	2 cut(s)	141, 517
PaeI	GCATGC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	344, 692
PpsI	GAGTC	2 cut(s)	344, 692
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	437
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	65, 684
SatI	GCNGC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	344, 692
SduI	GDGCHC	2 cut(s)	211, 346
SetI	ASST	6 cut(s)	32, 103, 239, 277, 453, 684
SfaNI	GCATC	1 cut(s)	699
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	84
SphI	GCATGC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	6, 62, 431, 589
SsiI	CCGC	3 cut(s)	188, 658, 673
TaaI	ACNGT	2 cut(s)	553, 604
TaqI	TCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	6, 62, 431, 589
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	65, 684
Tru9I	TTAA	2 cut(s)	65, 684
TscAI	CASTG	2 cut(s)	30, 115
TspDTI	ATGAA	2 cut(s)	180, 666
TspRI	CASTG	2 cut(s)	30, 115
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	2 cut(s)	141, 517
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.