Rh1AG332800

psbP-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010319
Physical Location & Seq
Reverse (-)
56786154 .. 56791735
5582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG332800.1

Sequence Viewer

Length: 765 bp
ATGGTTTTCGGGGTGGACGACGTAATAGAACTGATTGAGTTTGCTTCTGTAGTTGTTCCAACTGGCGAGAATGGTCTAACGCAGCTGACCATCATCCCAGTCAACTCCAAGCCTCATAACCCACATCAGAAAGCCAAACTACAAGCTTCAGTCTCCACCATCCACTTACAATATCAGAATTCTGAAGCCAAAGCCGGTTCTCACGTTGTCAGTTCTCACATTCAAATTATGGCAATATCATCACTCTCATTGAGCTGGGTTTCCACTACCTTACCTGACAATAAGTTGAATTTGCTCAATCATAATGAGGTTCCGAAAGCTACCGCTGCTTACTTTTCCGGTAAAACCATCACCTGCTCCAGTGAGACAGCTTCCAGTGAAGAAAGCTATTACAAGAGAAGGCCACTACTCTTGGGAGTTGGAGCACTAACTACAAGTCTACTTCATACAAGTTCCCTCTTGGCTGAAGGAATACCTGACAAGTTCCGAGGTTATGTTGACAAAGAAGATGGATATTCATATTATTACCCCTCTGATTGGAGGGATTTTGACTTCAGGGCACATGACTCTGCTTTCAAGGACCGATATATGCAACTTCACAATGTTAGAGTGAGATTTATACCCACAGACAAAAGTGACATCCATGATTTGGGTCCATTAGAAGAGGTTGTTCCCTATTTGGTGAGACACAAATTTGCTGCACCAAACCAAGTAGAAAAGATATTCGACATGCAGGAGGTTCTACTCTTTGCATCGTATCTTTAA

Protein Analysis

254

Amino Acids

28.49

Weight (kDa)

5.98

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 161 - 246 9.4e-19 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 649
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 324
AcsI RAATTY 3 cut(s) 178, 289, 692
AcuI CTGAAG 4 cut(s) 132, 204, 486, 538
AfiI CCNNNNNNNGG 2 cut(s) 537, 649
AgsI TTSAA 3 cut(s) 224, 289, 577
AluBI AGCT 6 cut(s) 85, 146, 255, 320, 371, 387
AluI AGCT 6 cut(s) 85, 146, 255, 320, 371, 387
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 3 cut(s) 157, 359, 679
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 82, 326, 698
ApoI RAATTY 3 cut(s) 178, 289, 692
AspS9I GGNCC 2 cut(s) 580, 653
AsuHPI GGTGA 2 cut(s) 343, 694
AvaII GGWCC 2 cut(s) 580, 653
BaeGI GKGCMC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 94, 313, 685
BccI CCATC 4 cut(s) 98, 167, 356, 503
BcoDI GTCTC 3 cut(s) 157, 359, 679
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 3 cut(s) 83, 327, 699
BlsI GCNGC 3 cut(s) 84, 328, 700
Bme18I GGWCC 2 cut(s) 580, 653
BmgT120I GGNCC 2 cut(s) 580, 653
BmiI GGNNCC 2 cut(s) 312, 654
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 761
BmuI ACTGGG 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 487
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 649
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 4 cut(s) 67, 98, 360, 375
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 3 cut(s) 93, 159, 639
BseLI CCNNNNNNNGG 2 cut(s) 537, 649
BseNI ACTGG 4 cut(s) 67, 98, 360, 375
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 3 cut(s) 94, 313, 685
BseYI CCCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 2 cut(s) 195, 339
BslI CCNNNNNNNGG 2 cut(s) 537, 649
BsmAI GTCTC 3 cut(s) 157, 359, 679
BsnI GGCC 1 cut(s) 403
Bsp1286I GDGCHC 2 cut(s) 427, 562
BspACI CCGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 312, 654
BspMI ACCTGC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 4 cut(s) 67, 98, 360, 375
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 657
BstF5I GGATG 3 cut(s) 93, 159, 639
BstMAI GTCTC 3 cut(s) 157, 359, 679
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 733
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 3 cut(s) 94, 313, 685
BsuRI GGCC 1 cut(s) 403
BtsCI GGATG 3 cut(s) 93, 159, 639
BtsIMutI CAGTG 2 cut(s) 367, 382
BveI ACCTGC 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 580, 653
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 3 cut(s) 563, 644, 730
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Eco47I GGWCC 2 cut(s) 580, 653
Eco57I CTGAAG 4 cut(s) 132, 204, 486, 538
EcoRI GAATTC 1 cut(s) 178
FaeI CATG 3 cut(s) 566, 647, 733
FatI CATG 3 cut(s) 562, 643, 729
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 83, 327, 699
FokI GGATG 3 cut(s) 80, 146, 626
Fsp4HI GCNGC 3 cut(s) 83, 327, 699
GluI GCNGC 3 cut(s) 83, 327, 699
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 1 cut(s) 403
HapII CCGG 2 cut(s) 195, 339
Hin1II CATG 3 cut(s) 566, 647, 733
HincII GTYRAC 2 cut(s) 103, 499
HindII GTYRAC 2 cut(s) 103, 499
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 1 cut(s) 566
HpaII CCGG 2 cut(s) 195, 339
HphI GGTGA 2 cut(s) 343, 694
Hpy166II GTNNAC 4 cut(s) 16, 103, 440, 499
Hpy188I TCNGA 6 cut(s) 129, 177, 184, 315, 488, 535
Hpy8I GTNNAC 4 cut(s) 16, 103, 440, 499
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 393, 461
HpyCH4IV ACGT 2 cut(s) 21, 204
HpyCH4V TGCA 4 cut(s) 592, 701, 733, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 21, 204
Hsp92II CATG 3 cut(s) 566, 647, 733
LmnI GCTCC 2 cut(s) 362, 422
Lsp1109I GCAGC 3 cut(s) 94, 313, 685
LweI GCATC 1 cut(s) 761
MaeII ACGT 2 cut(s) 21, 204
MaeIII GTNAC 1 cut(s) 635
MboII GAAGA 3 cut(s) 392, 518, 674
MhlI GDGCHC 2 cut(s) 427, 562
MluCI AATT 4 cut(s) 178, 225, 289, 692
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 83, 400
MnlI CCTC 8 cut(s) 123, 301, 467, 482, 534, 541, 658, 730
MseI TTAA 1 cut(s) 763
MspA1I CMGCKG 2 cut(s) 85, 326
MspI CCGG 2 cut(s) 195, 339
MwoI GCNNNNNNNGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 566, 647, 733
NlaIV GGNNCC 2 cut(s) 312, 654
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 733
PaqCI CACCTGC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 649
PkrI GCNGC 3 cut(s) 84, 328, 700
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 312, 654
PspPI GGNCC 2 cut(s) 580, 653
PvuII CAGCTG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 763
SatI GCNGC 3 cut(s) 83, 327, 699
Sau96I GGNCC 2 cut(s) 580, 653
SchI GAGTC 1 cut(s) 560
SduI GDGCHC 2 cut(s) 427, 562
SfaNI GCATC 1 cut(s) 761
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 2 cut(s) 580, 653
Sse9I AATT 4 cut(s) 178, 225, 289, 692
SsiI CCGC 1 cut(s) 324
TaiI ACGT 2 cut(s) 24, 207
TaqI TCGA 1 cut(s) 726
TaqII GACCGA 1 cut(s) 597
TasI AATT 4 cut(s) 178, 225, 289, 692
Tru1I TTAA 1 cut(s) 763
Tru9I TTAA 1 cut(s) 763
TscAI CASTG 2 cut(s) 367, 382
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 3 cut(s) 82, 326, 698
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 2 cut(s) 434, 507
TspRI CASTG 2 cut(s) 367, 382
Van91I CCANNNNNTGG 1 cut(s) 649
VpaK11BI GGWCC 2 cut(s) 580, 653
XapI RAATTY 3 cut(s) 178, 289, 692
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.