AT2G39630

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011278
Physical Location & Seq
Reverse (-)
16521736 .. 16524783
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39630.2

Sequence Viewer

Length: 1011 bp
ATGGAGTTTCTGGTAACAGTTGCGGAATTCAGCCTCTGGCTGCTGCTGATCGTCTTATTCGGATTTCTATCCGTTGTTGTTTTTGAAGCTTGGAGAAGGAGACACAGTAACGTCTCTGTCGAGACCGTGACTACACTCGACGATCCGAAATCTATAAAACCGATTCCTTGCCCTCATATTACCGACCCTGCCGAGAAGTATTTGTCTTTAATAGTTCCAGCGTATAATGAAGAACTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGGGACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTGGGAAGAATCAAGGCAAAGGAGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAGCTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACGGACCTAGAAAAACTTGAAAATCAGATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGATATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAGGAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGTTTCCATCTTGTGGTTCTATTAGCTGCTGGTCCTGGTATTCGGGATACACAGTGTGGCTTCAAGATGTTTACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAATGGTCCGAAATTCCCGGGTCTAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAGCTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

336

Amino Acids

38.34

Weight (kDa)

8.9

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 69 - 182 1.4e-22 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 715
AccII CGCG 1 cut(s) 466
AciI CCGC 3 cut(s) 23, 466, 627
AclWI GGATC 2 cut(s) 137, 991
AcsI RAATTY 2 cut(s) 26, 903
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 2 cut(s) 383, 848
AfiI CCNNNNNNNGG 1 cut(s) 715
AgsI TTSAA 9 cut(s) 86, 278, 533, 570, 604, 620, 766, 839, 881
AjnI CCWGG 1 cut(s) 736
AluBI AGCT 7 cut(s) 89, 362, 440, 475, 662, 728, 955
AluI AGCT 7 cut(s) 89, 362, 440, 475, 662, 728, 955
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 5 cut(s) 94, 116, 118, 232, 787
AlwI GGATC 2 cut(s) 137, 991
AlwNI CAGNNNCTG 1 cut(s) 36
Ama87I CYCGRG 2 cut(s) 650, 908
ApeKI GCWGC 6 cut(s) 40, 43, 248, 728, 782, 785
ApoI RAATTY 2 cut(s) 26, 903
Asp700I GAANNNNTTC 1 cut(s) 704
AspS9I GGNCC 3 cut(s) 517, 734, 897
AsuC2I CCSGG 2 cut(s) 909, 910
AsuHPI GGTGA 2 cut(s) 331, 623
AvaI CYCGRG 2 cut(s) 650, 908
AvaII GGWCC 3 cut(s) 517, 734, 897
BauI CACGAG 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 6 cut(s) 27, 30, 235, 715, 769, 772
BccI CCATC 6 cut(s) 326, 338, 491, 717, 819, 1008
BciT130I CCWGG 1 cut(s) 738
BciVI GTATCC 3 cut(s) 634, 742, 968
BcnI CCSGG 2 cut(s) 909, 910
BcoDI GTCTC 5 cut(s) 94, 116, 118, 232, 787
BfaI CTAG 3 cut(s) 521, 777, 789
BfuI GTATCC 3 cut(s) 634, 742, 968
BisI GCNGC 6 cut(s) 41, 44, 249, 729, 783, 786
BlsI GCNGC 6 cut(s) 42, 45, 250, 730, 784, 787
Bme1390I CCNGG 3 cut(s) 738, 909, 910
Bme18I GGWCC 3 cut(s) 517, 734, 897
BmeT110I CYCGRG 2 cut(s) 650, 908
BmgT120I GGNCC 3 cut(s) 517, 734, 897
BmrFI CCNGG 3 cut(s) 738, 909, 910
BmsI GCATC 3 cut(s) 296, 481, 593
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 2 cut(s) 909, 910
BsaBI GATNNNNATC 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 412, 908
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 2 cut(s) 412, 908
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 6 cut(s) 27, 30, 235, 715, 769, 772
Bsh1236I CGCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 2 cut(s) 650, 908
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 5 cut(s) 94, 116, 118, 232, 787
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 2 cut(s) 460, 933
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 650, 908
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 5 cut(s) 48, 142, 280, 540, 996
BspACI CCGC 3 cut(s) 23, 466, 627
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 1 cut(s) 466
BspPI GGATC 2 cut(s) 137, 991
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 988
BssECI CCNNGG 2 cut(s) 412, 908
BssMI GATC 5 cut(s) 48, 142, 280, 540, 996
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 4 cut(s) 19, 107, 127, 756
BstC8I GCNNGC 2 cut(s) 857, 957
BstDEI CTNAG 2 cut(s) 236, 588
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 466
BstKTI GATC 5 cut(s) 51, 145, 283, 543, 999
BstMAI GTCTC 5 cut(s) 94, 116, 118, 232, 787
BstMBI GATC 5 cut(s) 48, 142, 280, 540, 996
BstMWI GCNNNNNNNGC 3 cut(s) 472, 500, 952
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 2 cut(s) 946, 991
BstSCI CCNGG 3 cut(s) 736, 907, 908
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 6 cut(s) 27, 30, 235, 715, 769, 772
BstX2I RGATCY 1 cut(s) 996
BstYI RGATCY 1 cut(s) 996
BsuI GTATCC 3 cut(s) 634, 742, 968
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 2 cut(s) 857, 957
CaiI CAGNNNCTG 1 cut(s) 36
Cfr13I GGNCC 3 cut(s) 517, 734, 897
Cfr9I CCCGGG 1 cut(s) 908
Csp6I GTAC 2 cut(s) 382, 847
CviAII CATG 3 cut(s) 484, 943, 988
CviQI GTAC 2 cut(s) 382, 847
DdeI CTNAG 2 cut(s) 236, 588
DpnI GATC 5 cut(s) 50, 144, 282, 542, 998
DpnII GATC 5 cut(s) 48, 142, 280, 540, 996
DraIII CACNNNGTG 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 3 cut(s) 517, 734, 897
Eco88I CYCGRG 2 cut(s) 650, 908
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 3 cut(s) 487, 946, 991
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 483, 942, 987
FauI CCCGC 1 cut(s) 459
Fnu4HI GCNGC 6 cut(s) 41, 44, 249, 729, 783, 786
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 6 cut(s) 41, 44, 249, 729, 783, 786
FspBI CTAG 3 cut(s) 521, 777, 789
GluI GCNGC 6 cut(s) 41, 44, 249, 729, 783, 786
HapII CCGG 1 cut(s) 909
Hin1II CATG 3 cut(s) 487, 946, 991
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 2 cut(s) 163, 421
HpaII CCGG 1 cut(s) 909
HphI GGTGA 2 cut(s) 331, 623
Hpy166II GTNNAC 3 cut(s) 384, 774, 847
Hpy188I TCNGA 7 cut(s) 62, 147, 540, 575, 696, 816, 901
Hpy188III TCNNGA 6 cut(s) 121, 254, 278, 650, 746, 766
Hpy8I GTNNAC 3 cut(s) 384, 774, 847
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 90, 284, 694
HpyCH4III ACNGT 4 cut(s) 19, 107, 127, 756
HpyCH4IV ACGT 2 cut(s) 111, 807
HpyCH4V TGCA 4 cut(s) 287, 460, 548, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 472, 500, 952
HpyF3I CTNAG 2 cut(s) 236, 588
HpySE526I ACGT 2 cut(s) 111, 807
Hsp92II CATG 3 cut(s) 487, 946, 991
Kzo9I GATC 5 cut(s) 48, 142, 280, 540, 996
LmnI GCTCC 2 cut(s) 500, 952
Lsp1109I GCAGC 6 cut(s) 27, 30, 235, 715, 769, 772
LweI GCATC 3 cut(s) 296, 481, 593
MaeI CTAG 3 cut(s) 521, 777, 789
MaeII ACGT 2 cut(s) 111, 807
MaeIII GTNAC 4 cut(s) 13, 107, 127, 511
MalI GATC 5 cut(s) 50, 144, 282, 542, 998
MboI GATC 5 cut(s) 48, 142, 280, 540, 996
MboII GAAGA 4 cut(s) 242, 430, 572, 1006
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 996
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 4 cut(s) 26, 387, 839, 903
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 5 cut(s) 44, 183, 250, 307, 646
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 3 cut(s) 209, 864, 962
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 3 cut(s) 738, 909, 910
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 2 cut(s) 460, 933
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 3 cut(s) 472, 500, 952
NciI CCSGG 2 cut(s) 909, 910
NdeII GATC 5 cut(s) 48, 142, 280, 540, 996
NlaIII CATG 3 cut(s) 487, 946, 991
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 946, 991
PaeR7I CTCGAG 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 460, 933
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 163, 421
PflMI CCANNNNNTGG 1 cut(s) 715
PkrI GCNGC 6 cut(s) 42, 45, 250, 730, 784, 787
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspPI GGNCC 3 cut(s) 517, 734, 897
PstNI CAGNNNCTG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 996
RsaI GTAC 2 cut(s) 383, 848
RsaNI GTAC 2 cut(s) 382, 847
SaqAI TTAA 3 cut(s) 209, 864, 962
SatI GCNGC 6 cut(s) 41, 44, 249, 729, 783, 786
Sau3AI GATC 5 cut(s) 48, 142, 280, 540, 996
Sau96I GGNCC 3 cut(s) 517, 734, 897
ScrFI CCNGG 3 cut(s) 738, 909, 910
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 3 cut(s) 296, 481, 593
Sfr274I CTCGAG 1 cut(s) 650
SinI GGWCC 3 cut(s) 517, 734, 897
SlaI CTCGAG 1 cut(s) 650
SmaI CCCGGG 1 cut(s) 910
SmlI CTYRAG 2 cut(s) 254, 650
SmoI CTYRAG 2 cut(s) 254, 650
Sse9I AATT 4 cut(s) 26, 387, 839, 903
SsiI CCGC 3 cut(s) 23, 466, 627
SspI AATATT 1 cut(s) 566
SspMI CTAG 3 cut(s) 521, 777, 789
StyD4I CCNGG 3 cut(s) 736, 907, 908
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 4 cut(s) 19, 107, 127, 756
TaiI ACGT 2 cut(s) 114, 810
TaqI TCGA 3 cut(s) 120, 138, 651
TasI AATT 4 cut(s) 26, 387, 839, 903
TatI WGTACW 2 cut(s) 381, 846
TfiI GAWTC 2 cut(s) 163, 421
Tru1I TTAA 3 cut(s) 209, 864, 962
Tru9I TTAA 3 cut(s) 209, 864, 962
TscAI CASTG 1 cut(s) 761
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 6 cut(s) 40, 43, 248, 728, 782, 785
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 243, 361, 713
TspGWI ACGGA 2 cut(s) 61, 530
TspMI CCCGGG 1 cut(s) 908
TspRI CASTG 1 cut(s) 761
Van91I CCANNNNNTGG 1 cut(s) 715
VpaK11BI GGWCC 3 cut(s) 517, 734, 897
XapI RAATTY 2 cut(s) 26, 903
XceI RCATGY 2 cut(s) 946, 991
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XhoI CTCGAG 1 cut(s) 650
XmaI CCCGGG 1 cut(s) 908
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 3 cut(s) 521, 777, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.