FvH4_7g22450

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011278
Physical Location & Seq
Reverse (-)
17679010 .. 17682181
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22450.t1

Sequence Viewer

Length: 1002 bp
ATGGAGATCGTGATCGTACGGACGATGGTGGAGCTCCTCCTAGCCTTCATTCTCATCGTAGCCCTTGGTTTCATCTCCGTCGTCTTCTTCGAAGCTCATAGACGCCGCCACAACAACGCGCACGTCGAAGCTCCGGCGATGTTCCAAGACCCCAAGTCGTTGAAACAGGTTGAATGTCCTTCGATTTACGATCCGGCGGAGAAGTATCTGTCTTTGATAATCCCTGCATTCAATGAAGAGCTTAGGCTTCCTGTGGCGCTTGAGGAAACAATGAATTATCTCCAACAACGTGCAGCCAAGGATAAGTCGTTTTCTTATGAGGTGCTTATCGTTGATGACGGAAGTGTTGATGGGACAAAAAGAGTAGCATTTGAATTTGTAAAGAAATACACTGTAGACAATGTGAGGGTTATCCCTCTTGGAAGAAATCATGGAAAGGGAGAAGCTATCAGAAAAGGAATGCTTCATTCTAGGGGTGAGCTACTTCTAATGCTGGATGCAGATGGAGCAACAAAGGTTAATGATGTAGAAAAACTTGAAAAACAGATCCATGCAGAGTTAAAGCATGAGGACTCATCTGCTACTAATTCAAATTTTAGAATATCTGATATCCCAATTGCTGCATTTGGGTCCCGTGCTCATCTCGAGGAGAAGGCCTTGGCTTCAAGGAAGTGGTACCGCAATTTCTTAATGAAAGGTTTCCATCTTGTGGTACTTTTGGCTGCTGGTCCCGGAATTCGTGATACCCAGTGTGGTTTTAAGATGTTCACTAGGTCTGCTGCAAGGAAGCTTTTCACTAACATCCGTTTGAAGAGGTGGTGCTTTGATGTCGAGTTGGTTTTCCTTTGCAAACAGTTTGGAATTCCGATGGGTGAGATATCTGTGAACTGGTCGGAAATTCCTGGTTCAAAGGTGAACCCATTAAGCATTCCAAATATGCTTTGGGAGCTTGTGCTGATGTCTGTTGGATATAGAAGCAGTATGTGGAGAATTTCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

334

Amino Acids

37.83

Weight (kDa)

9.04

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 185 1.8e-22 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 709
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 119
AciI CCGC 3 cut(s) 106, 197, 679
AclWI GGATC 2 cut(s) 185, 541
AcsI RAATTY 6 cut(s) 374, 592, 735, 861, 897, 990
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 3 cut(s) 18, 677, 714
AfiI CCNNNNNNNGG 1 cut(s) 709
AgsI TTSAA 9 cut(s) 163, 173, 232, 374, 539, 591, 666, 811, 909
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 901
AluBI AGCT 9 cut(s) 34, 95, 131, 241, 446, 481, 790, 949, 999
AluI AGCT 9 cut(s) 34, 95, 131, 241, 446, 481, 790, 949, 999
Alw21I GWGCWC 2 cut(s) 36, 640
AlwI GGATC 2 cut(s) 185, 541
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 4 cut(s) 293, 620, 722, 779
ApoI RAATTY 6 cut(s) 374, 592, 735, 861, 897, 990
Asp700I GAANNNNTTC 2 cut(s) 698, 791
Asp718I GGTACC 1 cut(s) 675
AspLEI GCGC 2 cut(s) 121, 259
AspS9I GGNCC 2 cut(s) 630, 728
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 3 cut(s) 488, 884, 925
AsuII TTCGAA 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 2 cut(s) 630, 728
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 36, 640
BbvI GCAGC 4 cut(s) 305, 607, 709, 766
BccI CCATC 5 cut(s) 19, 344, 497, 711, 862
BciT130I CCWGG 1 cut(s) 903
BcnI CCSGG 1 cut(s) 732
BfaI CTAG 4 cut(s) 41, 471, 771, 996
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 5 cut(s) 106, 294, 621, 723, 780
BlsI GCNGC 5 cut(s) 107, 295, 622, 724, 781
Bme1390I CCNGG 2 cut(s) 732, 903
Bme18I GGWCC 2 cut(s) 630, 728
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 644
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 630, 728
BmiI GGNNCC 4 cut(s) 631, 632, 677, 730
BmrFI CCNGG 2 cut(s) 732, 903
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 64, 297, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse1I ACTGG 2 cut(s) 748, 893
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 903
BseDI CCNNGG 3 cut(s) 64, 297, 657
BseGI GGATG 2 cut(s) 502, 801
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 709
BseNI ACTGG 2 cut(s) 748, 893
BseRI GAGGAG 2 cut(s) 26, 662
BseXI GCAGC 4 cut(s) 305, 607, 709, 766
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 656
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 2 cut(s) 36, 640
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 3 cut(s) 134, 194, 732
BsiWI CGTACG 1 cut(s) 16
BslFI GGGAC 3 cut(s) 367, 616, 714
BslI CCNNNNNNNGG 1 cut(s) 709
BsmFI GGGAC 3 cut(s) 367, 616, 714
BsmI GAATGC 3 cut(s) 227, 465, 927
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 644
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 36, 640
Bsp143I GATC 4 cut(s) 6, 12, 190, 546
BspACI CCGC 3 cut(s) 106, 197, 679
BspANI GGCC 1 cut(s) 656
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 4 cut(s) 631, 632, 677, 730
BspPI GGATC 2 cut(s) 185, 541
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 675
BsrI ACTGG 2 cut(s) 748, 893
BssECI CCNNGG 3 cut(s) 64, 297, 657
BssMI GATC 4 cut(s) 6, 12, 190, 546
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 3 cut(s) 64, 297, 657
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 2 cut(s) 394, 855
Bst6I CTCTTC 2 cut(s) 231, 806
BstACI GRCGYC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 502, 801
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 121, 259
BstKTI GATC 4 cut(s) 9, 15, 193, 549
BstMBI GATC 4 cut(s) 6, 12, 190, 546
BstMWI GCNNNNNNNGC 2 cut(s) 506, 946
BstNI CCWGG 1 cut(s) 903
BstSCI CCNGG 2 cut(s) 730, 901
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 305, 607, 709, 766
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 1 cut(s) 656
BtgZI GCGATG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 502, 801
BtsIMutI CAGTG 2 cut(s) 390, 755
CfoI GCGC 2 cut(s) 121, 259
Cfr13I GGNCC 2 cut(s) 630, 728
CseI GACGC 1 cut(s) 111
Csp6I GTAC 3 cut(s) 17, 676, 713
CviAII CATG 3 cut(s) 431, 551, 566
CviQI GTAC 3 cut(s) 17, 676, 713
DdeI CTNAG 1 cut(s) 242
DpnI GATC 4 cut(s) 8, 14, 192, 548
DpnII GATC 4 cut(s) 6, 12, 190, 546
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 231, 806
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 231, 806
EciI GGCGGA 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 3 cut(s) 64, 297, 657
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 2 cut(s) 610, 879
Eco47I GGWCC 2 cut(s) 630, 728
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 630
EcoRI GAATTC 2 cut(s) 735, 861
EcoRII CCWGG 1 cut(s) 901
EcoRV GATATC 2 cut(s) 610, 879
EcoT14I CCWWGG 3 cut(s) 64, 297, 657
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 3 cut(s) 64, 297, 657
FaeI CATG 3 cut(s) 434, 554, 569
FaiI YATR 8 cut(s) 99, 318, 432, 552, 567, 938, 972, 983
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 3 cut(s) 367, 616, 714
FatI CATG 3 cut(s) 430, 550, 565
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 106, 294, 621, 723, 780
FokI GGATG 2 cut(s) 509, 788
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 106, 294, 621, 723, 780
FspBI CTAG 4 cut(s) 41, 471, 771, 996
GlaI GCGC 2 cut(s) 120, 258
GluI GCNGC 5 cut(s) 106, 294, 621, 723, 780
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 656
HapII CCGG 3 cut(s) 134, 194, 732
HgaI GACGC 1 cut(s) 111
HhaI GCGC 2 cut(s) 121, 259
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 3 cut(s) 434, 554, 569
Hin6I GCGC 2 cut(s) 119, 257
HinP1I GCGC 2 cut(s) 119, 257
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 1 cut(s) 572
HpaII CCGG 3 cut(s) 134, 194, 732
HphI GGTGA 3 cut(s) 488, 884, 925
Hpy166II GTNNAC 4 cut(s) 397, 768, 886, 916
Hpy188I TCNGA 4 cut(s) 452, 607, 867, 895
Hpy188III TCNNGA 3 cut(s) 10, 644, 740
Hpy8I GTNNAC 4 cut(s) 397, 768, 886, 916
Hpy99I CGWCG 2 cut(s) 83, 128
HpyAV CCTTC 3 cut(s) 55, 189, 646
HpyCH4III ACNGT 2 cut(s) 394, 855
HpyCH4IV ACGT 2 cut(s) 123, 289
HpyCH4V TGCA 7 cut(s) 227, 293, 500, 554, 623, 782, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 946
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 123, 289
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 434, 554, 569
HspAI GCGC 2 cut(s) 119, 257
KflI GGGWCCC 1 cut(s) 630
KpnI GGTACC 1 cut(s) 679
Kzo9I GATC 4 cut(s) 6, 12, 190, 546
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 5 cut(s) 31, 39, 136, 506, 946
Lsp1109I GCAGC 4 cut(s) 305, 607, 709, 766
LweI GCATC 1 cut(s) 487
MaeI CTAG 4 cut(s) 41, 471, 771, 996
MaeII ACGT 2 cut(s) 123, 289
MalI GATC 4 cut(s) 8, 14, 192, 548
MboI GATC 4 cut(s) 6, 12, 190, 546
MboII GAAGA 5 cut(s) 76, 79, 248, 435, 823
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 36, 640
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 3 cut(s) 307, 873, 946
MnlI CCTC 8 cut(s) 47, 256, 313, 399, 426, 562, 640, 807
MroXI GAANNNNTTC 2 cut(s) 698, 791
MseI TTAA 5 cut(s) 519, 560, 689, 759, 923
MspI CCGG 3 cut(s) 134, 194, 732
MspR9I CCNGG 2 cut(s) 732, 903
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 3 cut(s) 227, 465, 927
MvaI CCWGG 1 cut(s) 903
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 506, 946
NciI CCSGG 1 cut(s) 732
NdeII GATC 4 cut(s) 6, 12, 190, 546
NlaIII CATG 3 cut(s) 434, 554, 569
NlaIV GGNNCC 4 cut(s) 631, 632, 677, 730
NspV TTCGAA 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 644
PceI AGGCCT 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 123
PctI GAATGC 3 cut(s) 227, 465, 927
PdmI GAANNNNTTC 2 cut(s) 698, 791
Pfl23II CGTACG 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 709
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 5 cut(s) 107, 295, 622, 724, 781
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 630
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 901
PspGI CCWGG 1 cut(s) 901
PspLI CGTACG 1 cut(s) 16
PspN4I GGNNCC 4 cut(s) 631, 632, 677, 730
PspPI GGNCC 2 cut(s) 630, 728
PspPPI RGGWCCY 1 cut(s) 630
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 3 cut(s) 18, 677, 714
RsaNI GTAC 3 cut(s) 17, 676, 713
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 519, 560, 689, 759, 923
SatI GCNGC 5 cut(s) 106, 294, 621, 723, 780
Sau3AI GATC 4 cut(s) 6, 12, 190, 546
Sau96I GGNCC 2 cut(s) 630, 728
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 732, 903
SduI GDGCHC 2 cut(s) 36, 640
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 644
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 630, 728
SlaI CTCGAG 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 260, 644
SmoI CTYRAG 2 cut(s) 260, 644
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 3 cut(s) 106, 197, 679
SspMI CTAG 4 cut(s) 41, 471, 771, 996
SstI GAGCTC 1 cut(s) 36
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 730, 901
StyI CCWWGG 3 cut(s) 64, 297, 657
TaaI ACNGT 2 cut(s) 394, 855
TaiI ACGT 2 cut(s) 126, 292
TaqI TCGA 5 cut(s) 90, 126, 182, 645, 831
TauI GCSGC 1 cut(s) 108
Tru1I TTAA 5 cut(s) 519, 560, 689, 759, 923
Tru9I TTAA 5 cut(s) 519, 560, 689, 759, 923
TscAI CASTG 2 cut(s) 397, 755
TseI GCWGC 4 cut(s) 293, 620, 722, 779
TspDTI ATGAA 6 cut(s) 37, 61, 249, 287, 455, 707
TspGWI ACGGA 4 cut(s) 34, 67, 354, 794
TspRI CASTG 2 cut(s) 397, 755
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 630, 728
XapI RAATTY 6 cut(s) 374, 592, 735, 861, 897, 990
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XhoI CTCGAG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 2 cut(s) 698, 791
XspI CTAG 4 cut(s) 41, 471, 771, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.