Rorug01G0334200

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011278
Physical Location & Seq
Forward (+)
45229167 .. 45230195
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0334200.1

Sequence Viewer

Length: 1029 bp
ATGAAAAGATCTACTATTGTCTGGAGATTATTGCATGGTATCCTGCCAACAAAGTCATCACTTGTGAGAAGGAAGATTAGGGTGGAGGACCCACAGTGCCTTTTTTGCATGGGAGAATTGGAAACAGGTACGCATGTTTTCAAATCATGTCCTGCTCTTCTTTGCTTTTGGCTTTTTGGGCCTTTGAAGTTAGATGCTAGGCTCCACCCAGCGGGTAATGTGGTGGACTGGATAATGGAGATGATGGACTTTCTCACGGTGGATCAACGGGAATATTTTTTCATGGGGCTTTGGGCAATCTGGACCGAACGTAATAATATATTGTGGAAGGGGGTTTCATTTCAACCCATGAATTTGGTGCAGTGGACGTCGAGTTTGTTGGAAGATTATCAGAAATATCATCCCAAAGCAGTTAAGAAAAAGGGCAGGCCAAAGGTTAAGTGGCAGTGTCCACCGAGTGGAAGACTTAAAATTAATGTTGATGGGGCTTTTTGCTTGGAGGATGGTCGTGGGGGTATTGGAGTAGTGGTAAGAGATGATTCTGGCACGGGTATTGCTGCTTTAGCTAGACCTTTTGTACATGCACACTCGATTCTGAATATGGAAGCGGAGGCGTGTAGAGCTGGTCTACTTCTTGGTATTTACCAAGGTTGGGCTGACGTTGACATTGAAAGCGATTCTGCCATCTTGATTGCTGCTCTCAAGAGTGAGGAGAAGAATTTCTCGGAGGTAAGTCGGGTCTTGGATGACTGTAAAGAGTACTTTAATGCTTTCCAGTCTATTCGAGTCCGTCATATTTACCGTGAAGCAAATGGTGTTGCAAATAGGCTTGCACATCTTGCTAGTAGTGGTTCTTTTGATGATGTTTGGTTAGGGGAGACACCTGCTATTATTCAGGATGTTCTCTATGAGGATTATTGTCATTGTTTATCTGTAGCTCGGGGTTTAGGTGATACGTCCCCCCCGATGCAAAATTTTACTATTAATATAATAAATGGAACCGGGCGTGGGGCTGAGCCTCCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

342

Amino Acids

38.42

Weight (kDa)

6.75

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 2 - 57 3e-09 zinc-binding in reverse transcriptase
RVT_3 PF13456 159 - 280 8.4e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
AatII GACGTC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 892
AccB7I CCANNNNNTGG 1 cut(s) 458
AccI GTMKAC 1 cut(s) 628
AciI CCGC 2 cut(s) 212, 608
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 3 cut(s) 352, 718, 973
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 3 cut(s) 130, 579, 761
AfiI CCNNNNNNNGG 4 cut(s) 211, 458, 652, 1008
AgsI TTSAA 4 cut(s) 142, 187, 344, 671
AluBI AGCT 4 cut(s) 566, 623, 938, 1026
AluI AGCT 4 cut(s) 566, 623, 938, 1026
Alw26I GTCTC 1 cut(s) 872
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 939
AoxI GGCC 2 cut(s) 179, 428
ApeKI GCWGC 2 cut(s) 557, 695
ApoI RAATTY 3 cut(s) 352, 718, 973
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AseI ATTAAT 2 cut(s) 474, 984
Asp700I GAANNNNTTC 1 cut(s) 719
AspS9I GGNCC 3 cut(s) 88, 179, 303
AsuC2I CCSGG 1 cut(s) 1003
AsuHPI GGTGA 1 cut(s) 962
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 2 cut(s) 88, 303
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BbsI GAAGAC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 544, 682
BccI CCATC 4 cut(s) 238, 476, 497, 692
BciVI GTATCC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 1003
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 4 cut(s) 198, 567, 843, 1027
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 892
BfuI GTATCC 1 cut(s) 50
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 558, 696
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 2 cut(s) 559, 697
BmcAI AGTACT 1 cut(s) 761
Bme1390I CCNGG 1 cut(s) 1003
Bme18I GGWCC 2 cut(s) 88, 303
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 3 cut(s) 88, 179, 303
BmiI GGNNCC 3 cut(s) 90, 203, 1000
BmrFI CCNGG 1 cut(s) 1003
BmsI GCATC 2 cut(s) 184, 957
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 1003
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 458, 652, 1008
Bse1I ACTGG 2 cut(s) 233, 775
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 4 cut(s) 400, 508, 751, 904
BseLI CCNNNNNNNGG 4 cut(s) 211, 458, 652, 1008
BseMII CTCAG 1 cut(s) 1005
BseNI ACTGG 2 cut(s) 233, 775
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 2 cut(s) 544, 682
BseYI CCCAGC 2 cut(s) 208, 1022
BsgI GTGCAG 1 cut(s) 380
BshFI GGCC 2 cut(s) 181, 430
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 1 cut(s) 1002
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 4 cut(s) 211, 458, 652, 1008
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 1 cut(s) 943
BsnI GGCC 2 cut(s) 181, 430
BsoBI CYCGRG 1 cut(s) 939
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 2 cut(s) 8, 262
Bsp1720I GCTNAGC 1 cut(s) 1014
BspACI CCGC 2 cut(s) 212, 608
BspANI GGCC 2 cut(s) 181, 430
BspCNI CTCAG 1 cut(s) 1006
BspLI GGNNCC 3 cut(s) 90, 203, 1000
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 577
BsrI ACTGG 2 cut(s) 233, 775
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 2 cut(s) 8, 262
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 646
Bst4CI ACNGT 4 cut(s) 96, 259, 752, 803
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 839
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 428, 831
BstDEI CTNAG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 400, 508, 751, 904
BstKTI GATC 2 cut(s) 11, 265
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 2 cut(s) 8, 262
BstMWI GCNNNNNNNGC 5 cut(s) 105, 178, 563, 620, 839
BstNSI RCATGY 2 cut(s) 137, 584
BstSCI CCNGG 1 cut(s) 1001
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 544, 682
BstV2I GAAGAC 1 cut(s) 469
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 2 cut(s) 181, 430
BtsCI GGATG 4 cut(s) 400, 508, 751, 904
BtsI GCAGTG 2 cut(s) 368, 452
BtsIMutI CAGTG 3 cut(s) 101, 368, 452
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 2 cut(s) 428, 831
Cfr13I GGNCC 3 cut(s) 88, 179, 303
Csp6I GTAC 3 cut(s) 129, 578, 760
CviAII CATG 7 cut(s) 35, 109, 134, 147, 283, 349, 581
CviQI GTAC 3 cut(s) 129, 578, 760
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 2 cut(s) 10, 264
DpnII GATC 2 cut(s) 8, 262
DraIII CACNNNGTG 1 cut(s) 458
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 88, 303
Eco88I CYCGRG 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 7 cut(s) 38, 112, 137, 150, 286, 352, 584
FaqI GGGAC 1 cut(s) 943
FatI CATG 7 cut(s) 34, 108, 133, 146, 282, 348, 580
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 558, 696
FokI GGATG 4 cut(s) 387, 515, 758, 911
Fsp4HI GCNGC 2 cut(s) 558, 696
FspBI CTAG 4 cut(s) 198, 567, 843, 1027
GluI GCNGC 2 cut(s) 558, 696
GsaI CCCAGC 2 cut(s) 212, 1026
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 2 cut(s) 181, 430
HapII CCGG 1 cut(s) 1002
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 7 cut(s) 38, 112, 137, 150, 286, 352, 584
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 4 cut(s) 539, 592, 677, 786
HpaII CCGG 1 cut(s) 1002
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 5 cut(s) 226, 366, 452, 629, 664
Hpy188I TCNGA 3 cut(s) 393, 597, 727
Hpy188III TCNNGA 5 cut(s) 22, 301, 688, 703, 896
Hpy8I GTNNAC 5 cut(s) 226, 366, 452, 629, 664
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 63, 322
HpyCH4III ACNGT 4 cut(s) 96, 259, 752, 803
HpyCH4IV ACGT 4 cut(s) 310, 368, 660, 956
HpyCH4V TGCA 7 cut(s) 34, 108, 361, 584, 821, 833, 970
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 178, 563, 620, 839
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 4 cut(s) 310, 368, 660, 956
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 7 cut(s) 38, 112, 137, 150, 286, 352, 584
Kzo9I GATC 2 cut(s) 8, 262
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 544, 682
LweI GCATC 2 cut(s) 184, 957
MaeI CTAG 4 cut(s) 198, 567, 843, 1027
MaeII ACGT 4 cut(s) 310, 368, 660, 956
MalI GATC 2 cut(s) 10, 264
MboI GATC 2 cut(s) 8, 262
MboII GAAGA 5 cut(s) 85, 149, 395, 474, 727
MflI RGATCY 1 cut(s) 8
MluCI AATT 5 cut(s) 116, 352, 471, 718, 973
MlyI GAGTC 1 cut(s) 795
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 7 cut(s) 79, 493, 604, 703, 721, 904, 1029
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 6 cut(s) 414, 438, 468, 474, 765, 984
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 1002
MspR9I CCNGG 1 cut(s) 1003
MwoI GCNNNNNNNGC 5 cut(s) 105, 178, 563, 620, 839
NciI CCSGG 1 cut(s) 1003
NdeII GATC 2 cut(s) 8, 262
NlaIII CATG 7 cut(s) 38, 112, 137, 150, 286, 352, 584
NlaIV GGNNCC 3 cut(s) 90, 203, 1000
NspI RCATGY 2 cut(s) 137, 584
PaqCI CACCTGC 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 3 cut(s) 539, 592, 677
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 2 cut(s) 559, 697
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PpuMI RGGWCCY 1 cut(s) 88
PshBI ATTAAT 2 cut(s) 474, 984
Psp5II RGGWCCY 1 cut(s) 88
PspFI CCCAGC 2 cut(s) 208, 1022
PspN4I GGNNCC 3 cut(s) 90, 203, 1000
PspPI GGNCC 3 cut(s) 88, 179, 303
PspPPI RGGWCCY 1 cut(s) 88
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 3 cut(s) 130, 579, 761
RsaNI GTAC 3 cut(s) 129, 578, 760
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 6 cut(s) 414, 438, 468, 474, 765, 984
SatI GCNGC 2 cut(s) 558, 696
Sau3AI GATC 2 cut(s) 8, 262
Sau96I GGNCC 3 cut(s) 88, 179, 303
ScaI AGTACT 1 cut(s) 761
SchI GAGTC 1 cut(s) 795
ScrFI CCNGG 1 cut(s) 1003
SfaNI GCATC 2 cut(s) 184, 957
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 2 cut(s) 88, 303
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 5 cut(s) 116, 352, 471, 718, 973
SsiI CCGC 2 cut(s) 212, 608
SspI AATATT 1 cut(s) 275
SspMI CTAG 4 cut(s) 198, 567, 843, 1027
StyD4I CCNGG 1 cut(s) 1001
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 4 cut(s) 96, 259, 752, 803
TaiI ACGT 4 cut(s) 313, 371, 663, 959
TaqI TCGA 3 cut(s) 371, 590, 784
TaqII GACCGA 1 cut(s) 320
TasI AATT 5 cut(s) 116, 352, 471, 718, 973
TatI WGTACW 2 cut(s) 577, 759
TfiI GAWTC 3 cut(s) 539, 592, 677
Tru1I TTAA 6 cut(s) 414, 438, 468, 474, 765, 984
Tru9I TTAA 6 cut(s) 414, 438, 468, 474, 765, 984
TscAI CASTG 3 cut(s) 101, 368, 452
TseI GCWGC 2 cut(s) 557, 695
TspDTI ATGAA 4 cut(s) 17, 271, 327, 365
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 3 cut(s) 101, 368, 452
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 88, 303
VspI ATTAAT 2 cut(s) 474, 984
XapI RAATTY 3 cut(s) 352, 718, 973
XceI RCATGY 2 cut(s) 137, 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 4 cut(s) 198, 567, 843, 1027
ZraI GACGTC 1 cut(s) 369
ZrmI AGTACT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.