RLG00000027302

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011278
Physical Location & Seq
Forward (+)
10444530 .. 10447380
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027302

Sequence Viewer

Length: 984 bp
ATGGAGATCGTAATCGTATGGACGATGGTGGAGCTTCTGGTAGCCCTCATTCTCATCGTAGCCCTAGGTTTCGTCTCCGCAGTCTTCTTCGAAGCTCATAGAAGACGCCACAACAACGCGCACGTCGAAGCTCCGGCGATCTGCGAAGACCCGAAGTCGAGGAAACAGGTTACATGCCCTTCGATTTACGATCCGGCGGAGAAGTATCTATCTTTGATAATCCCTGCATTCAATGAAGAGCTTAGGCTTCCTCTGGCCCTTGAGGAAACAATGAATTATCTCCAACAACGTGCAGCCAAGGATAAGTCATTTTCTTACGAGGTGGTTATCGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATATGAATTTGTAAAGAAATACACTGTAGACAATGTGAGGGTTATCCTTCTTGGAAGAAATCATGGAAAGGGAGAAGCTATCAGAAAAGGAATGCTTCATTCAAGGGGTGAGCTACTTCTAATGCTGGATGCAGATGGAGCAACAAAGGTTGATGATGTAGAAAAACTTGAAAAAAAGATCCATGCAGTTGCAAGTGACGAATTTAAGTTTGGGGACTCACCTGCTAGTAATTCAGATTTTAGAATATCTGATATCCCAATTGCTGCATTTGGTTCCCGTGCTCATCTCGAGGAGAAGGCCTTGGCTTCAAGGAAGTGGTACCGCAATTTCTTGATGAAAGGTTTCCATCTTGTGGTTCTTTTGGCCGCTGGTCCCGGAATTCGTGATACCCAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGCTTTTCACTAACATCCGTTTGAAGAGGTGGTGCTTTGATGTTGAGTTGGTTTTCCTCGGCAATCGGTTTCGAATTCCGATGCGTGAGATATCTGTGAACTGGTCTGAAATTCCTGGGTCAAAGATGCATTGCCATCCTCCTGGCCTCTATACATCAGCAGTAGAAATCAAATATCTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

328

Amino Acids

37.04

Weight (kDa)

8.95

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 185 8.4e-23 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 598
Acc36I ACCTGC 1 cut(s) 598
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 78, 197, 691, 735
AclWI GGATC 2 cut(s) 185, 541
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 5 cut(s) 374, 569, 747, 873, 909
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 1 cut(s) 721
AgsI TTSAA 5 cut(s) 232, 471, 539, 678, 823
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 913, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 7 cut(s) 34, 95, 131, 241, 446, 481, 802
AluI AGCT 7 cut(s) 34, 95, 131, 241, 446, 481, 802
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 185, 541
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 4 cut(s) 255, 666, 732, 943
ApeKI GCWGC 4 cut(s) 293, 632, 788, 791
ApoI RAATTY 5 cut(s) 374, 569, 747, 873, 909
Asp700I GAANNNNTTC 2 cut(s) 710, 803
Asp718I GGTACC 1 cut(s) 687
AspA2I CCTAGG 1 cut(s) 64
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 256, 740
AsuC2I CCSGG 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 488, 579
AsuII TTCGAA 2 cut(s) 90, 871
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 1 cut(s) 740
AvrII CCTAGG 1 cut(s) 64
BanI GGYRCC 1 cut(s) 687
BbsI GAAGAC 3 cut(s) 76, 109, 153
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 4 cut(s) 305, 619, 775, 778
BccI CCATC 6 cut(s) 19, 332, 344, 497, 723, 942
BciT130I CCWGG 2 cut(s) 915, 942
BcnI CCSGG 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 3 cut(s) 65, 594, 783
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 598
BisI GCNGC 5 cut(s) 294, 633, 735, 789, 792
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 5 cut(s) 295, 634, 736, 790, 793
Bme1390I CCNGG 3 cut(s) 744, 915, 942
Bme18I GGWCC 1 cut(s) 740
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 256, 740
BmiI GGNNCC 3 cut(s) 643, 689, 742
BmrFI CCNGG 3 cut(s) 744, 915, 942
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 3 cut(s) 487, 870, 915
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 3 cut(s) 76, 109, 153
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 90, 871
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 760, 905
Bse3DI GCAATG 1 cut(s) 928
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 915, 942
BseDI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
BseGI GGATG 3 cut(s) 502, 813, 934
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 1 cut(s) 928
BseNI ACTGG 2 cut(s) 760, 905
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 4 cut(s) 305, 619, 775, 778
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 4 cut(s) 257, 668, 734, 945
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 652
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 3 cut(s) 134, 194, 744
BslFI GGGAC 3 cut(s) 367, 596, 726
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 367, 596, 726
BsmI GAATGC 2 cut(s) 227, 465
BsnI GGCC 4 cut(s) 257, 668, 734, 945
BsoBI CYCGRG 1 cut(s) 656
Bsp119I TTCGAA 2 cut(s) 90, 871
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 4 cut(s) 6, 138, 190, 546
BspACI CCGC 4 cut(s) 78, 197, 691, 735
BspANI GGCC 4 cut(s) 257, 668, 734, 945
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 3 cut(s) 643, 689, 742
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 2 cut(s) 185, 541
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 2 cut(s) 90, 871
BspT107I GGYRCC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 928
BsrI ACTGG 2 cut(s) 760, 905
BssECI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
BssMI GATC 4 cut(s) 6, 138, 190, 546
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 3 cut(s) 64, 297, 669
Bst2UI CCWGG 2 cut(s) 915, 942
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 231, 818
BstACI GRCGYC 1 cut(s) 106
BstBI TTCGAA 2 cut(s) 90, 871
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 502, 813, 934
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 9, 141, 193, 549
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 6, 138, 190, 546
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 2 cut(s) 915, 942
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 742, 913, 940
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 305, 619, 775, 778
BstV2I GAAGAC 3 cut(s) 76, 109, 153
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 4 cut(s) 257, 668, 734, 945
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 502, 813, 934
BtsIMutI CAGTG 2 cut(s) 390, 767
BveI ACCTGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 256, 740
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 174, 431, 551
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 1 cut(s) 242
DpnI GATC 4 cut(s) 8, 140, 192, 548
DpnII GATC 4 cut(s) 6, 138, 190, 546
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 231, 818
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 231, 818
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 64, 297, 669
Eco147I AGGCCT 1 cut(s) 668
Eco32I GATATC 2 cut(s) 622, 891
Eco47I GGWCC 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 2 cut(s) 747, 873
EcoRII CCWGG 2 cut(s) 913, 940
EcoRV GATATC 2 cut(s) 622, 891
EcoT14I CCWWGG 3 cut(s) 64, 297, 669
EcoT22I ATGCAT 1 cut(s) 930
ErhI CCWWGG 3 cut(s) 64, 297, 669
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 3 cut(s) 177, 434, 554
FaiI YATR 8 cut(s) 19, 99, 175, 370, 372, 432, 552, 951
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 3 cut(s) 367, 596, 726
FatI CATG 3 cut(s) 173, 430, 550
FauNDI CATATG 1 cut(s) 370
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 294, 633, 735, 789, 792
FokI GGATG 3 cut(s) 509, 800, 921
Fsp4HI GCNGC 5 cut(s) 294, 633, 735, 789, 792
FspBI CTAG 3 cut(s) 65, 594, 783
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 294, 633, 735, 789, 792
HaeIII GGCC 4 cut(s) 257, 668, 734, 945
HapII CCGG 3 cut(s) 134, 194, 744
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 3 cut(s) 177, 434, 554
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 1 cut(s) 584
HpaII CCGG 3 cut(s) 134, 194, 744
HphI GGTGA 2 cut(s) 488, 579
Hpy166II GTNNAC 3 cut(s) 397, 780, 898
Hpy188I TCNGA 5 cut(s) 452, 604, 619, 879, 907
Hpy188III TCNNGA 3 cut(s) 656, 700, 752
Hpy8I GTNNAC 3 cut(s) 397, 780, 898
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 189, 425, 658
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 123, 289
HpyCH4V TGCA 8 cut(s) 227, 293, 500, 554, 560, 635, 794, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 123, 289
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 177, 434, 554
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 6, 138, 190, 546
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 3 cut(s) 31, 136, 506
Lsp1109I GCAGC 4 cut(s) 305, 619, 775, 778
LweI GCATC 3 cut(s) 487, 870, 915
MaeI CTAG 3 cut(s) 65, 594, 783
MaeII ACGT 2 cut(s) 123, 289
MaeIII GTNAC 2 cut(s) 169, 563
MalI GATC 4 cut(s) 8, 140, 192, 548
MboI GATC 4 cut(s) 6, 138, 190, 546
MboII GAAGA 7 cut(s) 76, 79, 114, 158, 248, 435, 835
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 9 cut(s) 274, 374, 569, 598, 627, 694, 747, 873, 909
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 307
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 2 cut(s) 710, 803
MseI TTAA 3 cut(s) 573, 771, 982
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 3 cut(s) 134, 194, 744
MspR9I CCNGG 3 cut(s) 744, 915, 942
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 2 cut(s) 227, 465
MvaI CCWGG 2 cut(s) 915, 942
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 744
NdeI CATATG 1 cut(s) 370
NdeII GATC 4 cut(s) 6, 138, 190, 546
NlaIII CATG 3 cut(s) 177, 434, 554
NlaIV GGNNCC 3 cut(s) 643, 689, 742
NmeAIII GCCGAG 1 cut(s) 837
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 2 cut(s) 90, 871
PaeR7I CTCGAG 1 cut(s) 656
PaqCI CACCTGC 1 cut(s) 598
PceI AGGCCT 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 2 cut(s) 227, 465
PdmI GAANNNNTTC 2 cut(s) 710, 803
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 5 cut(s) 295, 634, 736, 790, 793
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 913, 940
PspGI CCWGG 2 cut(s) 913, 940
PspN4I GGNNCC 3 cut(s) 643, 689, 742
PspPI GGNCC 2 cut(s) 256, 740
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 573, 771, 982
SatI GCNGC 5 cut(s) 294, 633, 735, 789, 792
Sau3AI GATC 4 cut(s) 6, 138, 190, 546
Sau96I GGNCC 2 cut(s) 256, 740
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 3 cut(s) 744, 915, 942
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 3 cut(s) 487, 870, 915
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 656
SfuI TTCGAA 2 cut(s) 90, 871
SinI GGWCC 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 260, 656
SmoI CTYRAG 2 cut(s) 260, 656
Sse9I AATT 9 cut(s) 274, 374, 569, 598, 627, 694, 747, 873, 909
SseBI AGGCCT 1 cut(s) 668
SsiI CCGC 4 cut(s) 78, 197, 691, 735
SspMI CTAG 3 cut(s) 65, 594, 783
StuI AGGCCT 1 cut(s) 668
StyD4I CCNGG 3 cut(s) 742, 913, 940
StyI CCWWGG 3 cut(s) 64, 297, 669
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 126, 292
TaqI TCGA 6 cut(s) 90, 126, 158, 182, 657, 871
TasI AATT 9 cut(s) 274, 374, 569, 598, 627, 694, 747, 873, 909
TauI GCSGC 1 cut(s) 737
Tru1I TTAA 3 cut(s) 573, 771, 982
Tru9I TTAA 3 cut(s) 573, 771, 982
TscAI CASTG 2 cut(s) 397, 767
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 4 cut(s) 293, 632, 788, 791
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 5 cut(s) 249, 287, 387, 455, 719
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 397, 767
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 5 cut(s) 374, 569, 747, 873, 909
XceI RCATGY 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 656
XmaJI CCTAGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 2 cut(s) 710, 803
XspI CTAG 3 cut(s) 65, 594, 783
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.