Rw1G030300

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011278
Physical Location & Seq
Reverse (-)
58254941 .. 58257679
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030300.1

Sequence Viewer

Length: 1008 bp
ATGGAGATCGTAATCGTATGGACGATGGTGGAGCTTCTGGTAGCCCTCATTCTCATCGTAGCCCTAGGTTTCGTCTCCGCAGTCTTCTTCGAAGCTCATAGAAGACGCCACAACAACGCGCACGTCGAAGCTCCGGCGATCTGCGAAGACCCGAAGTCGAGGAAACAGGTTACGTGCCCTTCGATTTACGATCCGGCGGAGAAGTATCTATCTTTGATCATCCCTGCATTCAATGAAGAGCTTAGGCTTCCTCTGGCCCTTGAGGAAACAATGAATTATCTCCAACAACGTGCAGATAAGTCATTTTCTTACGAGGTGGTTATCGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATATGAATTTGTAAAGAAATACACTGTAGACAATGTGAGGGTTATCCTGCTTGGAAGAAATCATGGAAAGGGAGAGGCTATCAGAAAAGGAATGCTTCATTCAAGGGGTGAGCTACTTCTAATGCTGGATGCAGATGGAGCAACAAAGGTTGATGATGTAGAAAAACTTGAAAAAAAGATCCATGCAGTTGCAAGTGAGGAATTTGAGTTTGGGGACTCACCTGCTAGTAATTCAGATTTTAGAATATCTGATATCCCAATTGCTGCATTTGGTTCCCGTGCTCATCTCGAGGAGAAGGCCTTGGCTTCAAGGAAGTGGTACCGCAATTTCTTGATGAAAGGTTTCCATCTTGTGGTTCTTTTGGCTGCTGGTCCTGGAATTCGTGATACCCAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGCTTTTCACTAACATCCGTTTGAAGAGGTGGTGTTTTGATGTTGAATTGGTTTTCCTAGGCAATCGGTTTCGAATTCCGATGCGTGAGATATCTGTGAACTGGTCTGAAATTCCTGGGTCAAAGGTGAACCTATTAAGCATTCCAAATATGCTTTGGGAGCTTGTGCTGATGTCTGTTGGATATAGAAGCGGTATGTGGAGAATTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

335

Amino Acids

38.05

Weight (kDa)

8.77

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 182 7.2e-23 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 592
Acc36I ACCTGC 1 cut(s) 592
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 681
AccB7I CCANNNNNTGG 1 cut(s) 715
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 78, 197, 685, 984
AclWI GGATC 2 cut(s) 185, 535
AcsI RAATTY 6 cut(s) 368, 563, 741, 867, 903, 996
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 715
AgsI TTSAA 6 cut(s) 232, 465, 533, 672, 817, 839
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 736, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 7 cut(s) 34, 95, 131, 241, 475, 796, 955
AluI AGCT 7 cut(s) 34, 95, 131, 241, 475, 796, 955
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 185, 535
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 2 cut(s) 255, 660
ApeKI GCWGC 4 cut(s) 626, 728, 782, 785
ApoI RAATTY 6 cut(s) 368, 563, 741, 867, 903, 996
Asp700I GAANNNNTTC 2 cut(s) 704, 797
Asp718I GGTACC 1 cut(s) 681
AspA2I CCTAGG 2 cut(s) 64, 850
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 256, 734
AsuHPI GGTGA 3 cut(s) 482, 573, 931
AsuII TTCGAA 2 cut(s) 90, 865
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 1 cut(s) 734
AvrII CCTAGG 2 cut(s) 64, 850
BaeGI GKGCMC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 681
BbsI GAAGAC 3 cut(s) 76, 109, 153
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 613, 715, 769, 772
BccI CCATC 5 cut(s) 19, 326, 338, 491, 717
BciT130I CCWGG 2 cut(s) 738, 909
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 4 cut(s) 65, 588, 777, 851
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 4 cut(s) 627, 729, 783, 786
BlnI CCTAGG 2 cut(s) 64, 850
BlsI GCNGC 4 cut(s) 628, 730, 784, 787
Bme1390I CCNGG 2 cut(s) 738, 909
Bme18I GGWCC 1 cut(s) 734
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 650
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 256, 734
BmiI GGNNCC 2 cut(s) 637, 683
BmrFI CCNGG 2 cut(s) 738, 909
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 2 cut(s) 481, 864
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 3 cut(s) 76, 109, 153
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 90, 865
BpuEI CTTGAG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 4 cut(s) 64, 663, 850, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 3 cut(s) 754, 899, 1002
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 738, 909
BseDI CCNNGG 4 cut(s) 64, 663, 850, 908
BseGI GGATG 3 cut(s) 219, 496, 807
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 715
BseNI ACTGG 3 cut(s) 754, 899, 1002
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 4 cut(s) 613, 715, 769, 772
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 257, 662
BshNI GGYRCC 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 2 cut(s) 134, 194
BslFI GGGAC 2 cut(s) 361, 590
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 361, 590
BsmI GAATGC 3 cut(s) 227, 459, 933
BsnI GGCC 2 cut(s) 257, 662
BsoBI CYCGRG 1 cut(s) 650
Bsp119I TTCGAA 2 cut(s) 90, 865
Bsp1286I GDGCHC 2 cut(s) 179, 646
Bsp143I GATC 5 cut(s) 6, 138, 190, 216, 540
BspACI CCGC 4 cut(s) 78, 197, 685, 984
BspANI GGCC 2 cut(s) 257, 662
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 637, 683
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 185, 535
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 2 cut(s) 90, 865
BspT107I GGYRCC 1 cut(s) 681
BsrI ACTGG 3 cut(s) 754, 899, 1002
BssECI CCNNGG 4 cut(s) 64, 663, 850, 908
BssMI GATC 5 cut(s) 6, 138, 190, 216, 540
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 3 cut(s) 64, 663, 850
Bst2UI CCWGG 2 cut(s) 738, 909
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 231, 812
BstACI GRCGYC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 174
BstBI TTCGAA 2 cut(s) 90, 865
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 219, 496, 807
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 5 cut(s) 9, 141, 193, 219, 543
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 5 cut(s) 6, 138, 190, 216, 540
BstMWI GCNNNNNNNGC 2 cut(s) 500, 952
BstNI CCWGG 2 cut(s) 738, 909
BstSCI CCNGG 2 cut(s) 736, 907
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 179
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 613, 715, 769, 772
BstV2I GAAGAC 3 cut(s) 76, 109, 153
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
BsuRI GGCC 2 cut(s) 257, 662
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 219, 496, 807
BtsIMutI CAGTG 2 cut(s) 384, 761
BveI ACCTGC 1 cut(s) 592
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 256, 734
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 682
CviAII CATG 2 cut(s) 425, 545
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 242
DpnI GATC 5 cut(s) 8, 140, 192, 218, 542
DpnII GATC 5 cut(s) 6, 138, 190, 216, 540
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 231, 812
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 231, 812
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 64, 663, 850
Eco147I AGGCCT 1 cut(s) 662
Eco32I GATATC 2 cut(s) 616, 885
Eco47I GGWCC 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 650
EcoRI GAATTC 2 cut(s) 741, 867
EcoRII CCWGG 2 cut(s) 736, 907
EcoRV GATATC 2 cut(s) 616, 885
EcoT14I CCWWGG 3 cut(s) 64, 663, 850
ErhI CCWWGG 3 cut(s) 64, 663, 850
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 428, 548
FaiI YATR 9 cut(s) 19, 99, 364, 366, 426, 546, 944, 978, 989
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 2 cut(s) 361, 590
FatI CATG 2 cut(s) 424, 544
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 627, 729, 783, 786
FokI GGATG 3 cut(s) 206, 503, 794
Fsp4HI GCNGC 4 cut(s) 627, 729, 783, 786
FspBI CTAG 4 cut(s) 65, 588, 777, 851
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 627, 729, 783, 786
HaeIII GGCC 2 cut(s) 257, 662
HapII CCGG 2 cut(s) 134, 194
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 2 cut(s) 428, 548
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 1 cut(s) 578
HpaII CCGG 2 cut(s) 134, 194
HphI GGTGA 3 cut(s) 482, 573, 931
Hpy166II GTNNAC 4 cut(s) 391, 774, 892, 922
Hpy188I TCNGA 5 cut(s) 446, 598, 613, 873, 901
Hpy188III TCNNGA 3 cut(s) 650, 694, 746
Hpy8I GTNNAC 4 cut(s) 391, 774, 892, 922
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 189, 652
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 3 cut(s) 123, 173, 289
HpyCH4V TGCA 7 cut(s) 227, 293, 494, 548, 554, 629, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 952
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 3 cut(s) 123, 173, 289
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 2 cut(s) 428, 548
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 5 cut(s) 6, 138, 190, 216, 540
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 4 cut(s) 31, 136, 500, 952
Lsp1109I GCAGC 4 cut(s) 613, 715, 769, 772
LweI GCATC 2 cut(s) 481, 864
MaeI CTAG 4 cut(s) 65, 588, 777, 851
MaeII ACGT 3 cut(s) 123, 173, 289
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 8, 140, 192, 218, 542
MboI GATC 5 cut(s) 6, 138, 190, 216, 540
MboII GAAGA 7 cut(s) 76, 79, 114, 158, 248, 429, 829
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 2 cut(s) 179, 646
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 307, 952
MroXI GAANNNNTTC 2 cut(s) 704, 797
MseI TTAA 2 cut(s) 765, 929
MspI CCGG 2 cut(s) 134, 194
MspR9I CCNGG 2 cut(s) 738, 909
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 3 cut(s) 227, 459, 933
MvaI CCWGG 2 cut(s) 738, 909
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 500, 952
NdeI CATATG 1 cut(s) 364
NdeII GATC 5 cut(s) 6, 138, 190, 216, 540
NlaIII CATG 2 cut(s) 428, 548
NlaIV GGNNCC 2 cut(s) 637, 683
NspV TTCGAA 2 cut(s) 90, 865
PaeR7I CTCGAG 1 cut(s) 650
PaqCI CACCTGC 1 cut(s) 592
PceI AGGCCT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 179
PctI GAATGC 3 cut(s) 227, 459, 933
PdmI GAANNNNTTC 2 cut(s) 704, 797
PflMI CCANNNNNTGG 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 4 cut(s) 628, 730, 784, 787
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Ppu21I YACGTR 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 736, 907
PspGI CCWGG 2 cut(s) 736, 907
PspN4I GGNNCC 2 cut(s) 637, 683
PspPI GGNCC 2 cut(s) 256, 734
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 765, 929
SatI GCNGC 4 cut(s) 627, 729, 783, 786
Sau3AI GATC 5 cut(s) 6, 138, 190, 216, 540
Sau96I GGNCC 2 cut(s) 256, 734
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 738, 909
SduI GDGCHC 2 cut(s) 179, 646
SfaNI GCATC 2 cut(s) 481, 864
SfcI CTRYAG 1 cut(s) 387
Sfr274I CTCGAG 1 cut(s) 650
SfuI TTCGAA 2 cut(s) 90, 865
SinI GGWCC 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 260, 650
SmoI CTYRAG 2 cut(s) 260, 650
SseBI AGGCCT 1 cut(s) 662
SsiI CCGC 4 cut(s) 78, 197, 685, 984
SspMI CTAG 4 cut(s) 65, 588, 777, 851
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 736, 907
StyI CCWWGG 3 cut(s) 64, 663, 850
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 3 cut(s) 126, 176, 292
TaqI TCGA 6 cut(s) 90, 126, 158, 182, 651, 865
Tru1I TTAA 2 cut(s) 765, 929
Tru9I TTAA 2 cut(s) 765, 929
TscAI CASTG 2 cut(s) 391, 761
TseI GCWGC 4 cut(s) 626, 728, 782, 785
TspDTI ATGAA 5 cut(s) 249, 287, 381, 449, 713
TspGWI ACGGA 1 cut(s) 800
TspRI CASTG 2 cut(s) 391, 761
Van91I CCANNNNNTGG 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 6 cut(s) 368, 563, 741, 867, 903, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XhoI CTCGAG 1 cut(s) 650
XmaJI CCTAGG 2 cut(s) 64, 850
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 2 cut(s) 704, 797
XspI CTAG 4 cut(s) 65, 588, 777, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.