Prupe.2G235200_v2.0.a1

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011278
Physical Location & Seq
Reverse (-)
25735786 .. 25738846
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G235200.1

Sequence Viewer

Length: 1014 bp
ATGGAGTTTGTAATTGTATGGACGATGGTGGAACTCCTGTTCGCCCTCATTCTCATCGTAGCATTAGGTTTTGTTTCTGCAGTCTTCTTCGAAGCTTATCGAAGAAAAAACAACCACGCGCACGTTGAAGCTCCCGCGATCTTTGAGGACCCGAAATCGTTGAAACAGGTTCGTTGCCCTTCGATTTTTGATCCGGCTGAAAAGTATATATCTTTGATAGTCCCTGCATTCAATGAGGAGCTTAGGCTTCCTGGAGCCCTTGAGGAAACCATGAATTATCTTCAACAACGTGCCGCAAAGGATAAATCGTTTTCTTATGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGAGACAAAAAGAGTAGCATTTGAATTTGTAAAGAAATACTCTGTGGATAATGTGAGGGTTATCCTTCTTGGTAAAAATCATGGAAAGGGAGAAGCTATCAGAAAAGGAATGCTTCATTCACGGGGTGAGCTACTTTTAATGTTGGATGCTGATGGAGCAACCAAGGTTAATGATGCAGAAAAACTTGAAAACCAGATCCATGCAGCTGCCAAAGAGGAATTTAAGTTTGGGGACTCACCTGCTAGTAATTCAAGTTTTAGAATATCTGATATCCCAATTGCTGCATTTGGTTCTCGTGCTCATCTTGAGGAGAAAGCCCTGGCTACAAGGAAGTGGCACCGCAATTTCTTGATGAAAGGTTTCCATCTTGTGGTTCTTTTGGCTGCTGGTCCCGGAATTCGTGATACACAATGTGGTTTTAAGATGTTCACCAGGGCTGCTGCAAGAAAGCTTTTCACTAACATCCGTTTGAACAGGTGGTGCTTTGATGTTGAGCTGGTTTACCTATGCAAATGGTTCAGAATTCGAATGATTGAGATATCTGTAAACTGGTCTGAAATTCCTGGATCAAAGGTGAATCCGTTAAGCATTCCAAATATGCTTTGGGAGCTTGTGCTCATGTCTGTTGGATATAGAACCGGTATGTGGCAAATTCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

338

Amino Acids

38.39

Weight (kDa)

9.03

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 598
Acc36I ACCTGC 1 cut(s) 598
AccB1I GGYRCC 1 cut(s) 687
AccB7I CCANNNNNTGG 1 cut(s) 721
AccII CGCG 2 cut(s) 119, 137
AciI CCGC 3 cut(s) 135, 294, 691
AclWI GGATC 3 cut(s) 185, 541, 925
AcsI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
AdeI CACNNNGTG 2 cut(s) 476, 764
AfiI CCNNNNNNNGG 2 cut(s) 721, 996
AgeI ACCGGT 1 cut(s) 989
AgsI TTSAA 8 cut(s) 128, 163, 232, 284, 374, 539, 603, 823
AjnI CCWGG 4 cut(s) 250, 669, 782, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
Alw21I GWGCWC 2 cut(s) 652, 969
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 3 cut(s) 185, 541, 925
ApeKI GCWGC 6 cut(s) 554, 557, 632, 734, 788, 791
ApoI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
AsiGI ACCGGT 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 148, 740
AsuC2I CCSGG 1 cut(s) 744
AsuHPI GGTGA 5 cut(s) 337, 488, 579, 772, 937
AsuII TTCGAA 2 cut(s) 90, 877
AvaII GGWCC 2 cut(s) 148, 740
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 1 cut(s) 259
BauI CACGAG 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 652, 969
BbvI GCAGC 6 cut(s) 544, 566, 619, 721, 775, 778
BccI CCATC 4 cut(s) 19, 332, 497, 723
BciT130I CCWGG 4 cut(s) 252, 671, 784, 915
BcnI CCSGG 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 598
BisI GCNGC 7 cut(s) 294, 555, 558, 633, 735, 789, 792
BlsI GCNGC 7 cut(s) 295, 556, 559, 634, 736, 790, 793
Bme1390I CCNGG 5 cut(s) 252, 671, 744, 784, 915
Bme18I GGWCC 2 cut(s) 148, 740
BmgT120I GGNCC 2 cut(s) 148, 740
BmiI GGNNCC 4 cut(s) 150, 256, 689, 742
BmrFI CCNGG 5 cut(s) 252, 671, 744, 784, 915
BmsI GCATC 2 cut(s) 487, 514
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 90, 877
BpuEI CTTGAG 2 cut(s) 281, 677
BpuMI CCSGG 1 cut(s) 744
BsaJI CCNNGG 3 cut(s) 513, 669, 783
BsaWI WCCGGW 1 cut(s) 989
Bsc4I CCNNNNNNNGG 2 cut(s) 721, 996
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 1 cut(s) 905
BseBI CCWGG 4 cut(s) 252, 671, 784, 915
BseDI CCNNGG 3 cut(s) 513, 669, 783
BseGI GGATG 2 cut(s) 502, 813
BseLI CCNNNNNNNGG 2 cut(s) 721, 996
BseNI ACTGG 1 cut(s) 905
BseRI GAGGAG 2 cut(s) 251, 674
BseXI GCAGC 6 cut(s) 544, 566, 619, 721, 775, 778
Bsh1236I CGCG 2 cut(s) 119, 137
BshNI GGYRCC 1 cut(s) 687
BshTI ACCGGT 1 cut(s) 989
BsiHKAI GWGCWC 2 cut(s) 652, 969
BsiSI CCGG 3 cut(s) 194, 744, 990
BslFI GGGAC 3 cut(s) 206, 596, 726
BslI CCNNNNNNNGG 2 cut(s) 721, 996
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 3 cut(s) 206, 596, 726
BsmI GAATGC 3 cut(s) 227, 465, 939
Bsp119I TTCGAA 2 cut(s) 90, 877
Bsp1286I GDGCHC 3 cut(s) 259, 652, 969
Bsp143I GATC 4 cut(s) 138, 190, 546, 917
BspACI CCGC 3 cut(s) 135, 294, 691
BspFNI CGCG 2 cut(s) 119, 137
BspLI GGNNCC 4 cut(s) 150, 256, 689, 742
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 3 cut(s) 185, 541, 925
BspT104I TTCGAA 2 cut(s) 90, 877
BspT107I GGYRCC 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 1 cut(s) 905
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 3 cut(s) 513, 669, 783
BssMI GATC 4 cut(s) 138, 190, 546, 917
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 4 cut(s) 252, 671, 784, 915
BstBI TTCGAA 2 cut(s) 90, 877
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 502, 813
BstFNI CGCG 2 cut(s) 119, 137
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 141, 193, 549, 920
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 4 cut(s) 138, 190, 546, 917
BstMWI GCNNNNNNNGC 2 cut(s) 506, 958
BstNI CCWGG 4 cut(s) 252, 671, 784, 915
BstSCI CCNGG 5 cut(s) 250, 669, 742, 782, 913
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 2 cut(s) 119, 137
BstV1I GCAGC 6 cut(s) 544, 566, 619, 721, 775, 778
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BtsCI GGATG 2 cut(s) 502, 813
BveI ACCTGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 2 cut(s) 148, 740
CspAI ACCGGT 1 cut(s) 989
CviAII CATG 4 cut(s) 271, 431, 551, 970
DdeI CTNAG 1 cut(s) 242
DpnI GATC 4 cut(s) 140, 192, 548, 919
DpnII GATC 4 cut(s) 138, 190, 546, 917
DraIII CACNNNGTG 2 cut(s) 476, 764
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 2 cut(s) 622, 891
Eco47I GGWCC 2 cut(s) 148, 740
EcoO109I RGGNCCY 1 cut(s) 148
EcoRI GAATTC 2 cut(s) 747, 873
EcoRII CCWGG 4 cut(s) 250, 669, 782, 913
EcoRV GATATC 2 cut(s) 622, 891
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 4 cut(s) 274, 434, 554, 973
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 3 cut(s) 206, 596, 726
FatI CATG 4 cut(s) 270, 430, 550, 969
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 7 cut(s) 294, 555, 558, 633, 735, 789, 792
FokI GGATG 2 cut(s) 509, 800
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 7 cut(s) 294, 555, 558, 633, 735, 789, 792
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 120
GluI GCNGC 7 cut(s) 294, 555, 558, 633, 735, 789, 792
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 3 cut(s) 194, 744, 990
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 274, 434, 554, 973
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 93, 800
HinfI GANTC 2 cut(s) 584, 928
HpaII CCGG 3 cut(s) 194, 744, 990
HphI GGTGA 5 cut(s) 337, 488, 579, 772, 937
Hpy166II GTNNAC 3 cut(s) 780, 853, 898
Hpy188I TCNGA 4 cut(s) 452, 619, 872, 907
Hpy188III TCNNGA 3 cut(s) 656, 700, 752
Hpy8I GTNNAC 3 cut(s) 780, 853, 898
HpyAV CCTTC 2 cut(s) 189, 425
HpyCH4IV ACGT 2 cut(s) 123, 289
HpyCH4V TGCA 7 cut(s) 80, 227, 527, 554, 635, 794, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 958
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 123, 289
Hsp92II CATG 4 cut(s) 274, 434, 554, 973
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 138, 190, 546, 917
LmnI GCTCC 5 cut(s) 136, 238, 254, 506, 958
Lsp1109I GCAGC 6 cut(s) 544, 566, 619, 721, 775, 778
LweI GCATC 2 cut(s) 487, 514
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 123, 289
MalI GATC 4 cut(s) 140, 192, 548, 919
MboI GATC 4 cut(s) 138, 190, 546, 917
MboII GAAGA 4 cut(s) 76, 79, 114, 272
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 3 cut(s) 259, 652, 969
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 474, 958
MnlI CCTC 8 cut(s) 56, 139, 229, 256, 313, 399, 559, 652
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 5 cut(s) 488, 519, 573, 771, 935
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 3 cut(s) 194, 744, 990
MspR9I CCNGG 5 cut(s) 252, 671, 744, 784, 915
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 3 cut(s) 227, 465, 939
MvaI CCWGG 4 cut(s) 252, 671, 784, 915
MvnI CGCG 2 cut(s) 119, 137
MwoI GCNNNNNNNGC 2 cut(s) 506, 958
NciI CCSGG 1 cut(s) 744
NdeII GATC 4 cut(s) 138, 190, 546, 917
NlaIII CATG 4 cut(s) 274, 434, 554, 973
NlaIV GGNNCC 4 cut(s) 150, 256, 689, 742
NspV TTCGAA 2 cut(s) 90, 877
PaqCI CACCTGC 1 cut(s) 598
PctI GAATGC 3 cut(s) 227, 465, 939
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 1 cut(s) 928
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 3 cut(s) 250, 742, 913
PinAI ACCGGT 1 cut(s) 989
PkrI GCNGC 7 cut(s) 295, 556, 559, 634, 736, 790, 793
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 4 cut(s) 250, 669, 782, 913
PspGI CCWGG 4 cut(s) 250, 669, 782, 913
PspN4I GGNNCC 4 cut(s) 150, 256, 689, 742
PspPI GGNCC 2 cut(s) 148, 740
PspPPI RGGWCCY 1 cut(s) 148
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 557
SaqAI TTAA 5 cut(s) 488, 519, 573, 771, 935
SatI GCNGC 7 cut(s) 294, 555, 558, 633, 735, 789, 792
Sau3AI GATC 4 cut(s) 138, 190, 546, 917
Sau96I GGNCC 2 cut(s) 148, 740
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 252, 671, 744, 784, 915
SduI GDGCHC 3 cut(s) 259, 652, 969
SfaNI GCATC 2 cut(s) 487, 514
SfcI CTRYAG 1 cut(s) 78
SfuI TTCGAA 2 cut(s) 90, 877
SinI GGWCC 2 cut(s) 148, 740
SmlI CTYRAG 2 cut(s) 260, 656
SmoI CTYRAG 2 cut(s) 260, 656
SsiI CCGC 3 cut(s) 135, 294, 691
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 5 cut(s) 250, 669, 742, 782, 913
StyI CCWWGG 1 cut(s) 513
TaiI ACGT 2 cut(s) 126, 292
TaqI TCGA 4 cut(s) 90, 100, 182, 877
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 5 cut(s) 488, 519, 573, 771, 935
Tru9I TTAA 5 cut(s) 488, 519, 573, 771, 935
TseI GCWGC 6 cut(s) 554, 557, 632, 734, 788, 791
TspDTI ATGAA 3 cut(s) 287, 455, 719
TspGWI ACGGA 2 cut(s) 806, 921
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 148, 740
XapI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
XcmI CCANNNNNNNNNTGG 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.