MD01G1133900.v1.1

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011278
Physical Location & Seq
Reverse (-)
24358832 .. 24362268
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1133900.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGAGTTTGTAATTGTATGGACAATGGTGGAGCTCCTGCTCGCCCTCATTCTCGTCGTCGCCACAGGTTTAGCTTCTGCCGTCTTTTTCGAAGCTTATCGCAGAAAAAACAACAACGCGCATGTTGGAGCTCCCGCGATCTTCGAGGACCCCAATTCATTGAAACAGGTTCCCTGCCCTTCTATTTTTGATACAGCAGAGAAGTATTTATCTTTGATTATCCCTGCATTCAATGAGGAGCTTAGGCTTCCCGGAGCACTTGATGAAACCATGAATTATCTTCAACAGCGTGCGGTGAAGGATAAGTCTTTTACTTATGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATTTGAATTTATAAAGAAATATACCGTGGACACTATGAGGATTATTCTTCTTGGTAGGAATCATGGAAAGGGTGAAGCTATCAGAAAAGGAATGCTACATTCACGTGGTGAGCTACTTCTAATGCTGGATGCTGATGGAGCAACCAAGGTTAATGATGTAGAAAAACTTGAAAAACAGATCCATGAAGTTGCCAAACAGGATAAGTTTAGGGACTCATCTGCGGGTAATTCAAGTTTTAGAATATCTGATATCCCCATTGCTGCATTTGGTTCTCGTGCTCATCTTGAGGGGAAAGCCCTGGCTACAAGGAAGTGGTATCGCAATTTTTTGATGAAAGGTTTTCATCTTGTGGTTCTTTTGGCTGCTGGTCCTGGAATTCGGGATACACAGTGTGGGTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGATTTTCACTAACATCCGTTTGAACAGGTGGTGCTTTGACGTTGAGGTGGTTTACCTGTGCAAATGGTTCAAAATTCCAATGCTTGAGATATCTGTAAACTGGTCTGAAATTCCTGGATCGAAGGTGAACCTGTTGAGCATTCCAAATATGCTATGGGAGCTTGTTCTCATGTCTGTTGGATATAGAACCGGCATGTGGAAAATTCGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

337

Amino Acids

38.06

Weight (kDa)

9.3

Isoelectric Point (pI)

19.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 185 8.6e-21 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccII CGCG 2 cut(s) 119, 137
AciI CCGC 3 cut(s) 135, 293, 590
AclWI GGATC 2 cut(s) 541, 922
AcsI RAATTY 5 cut(s) 374, 744, 870, 906, 999
AcvI CACGTG 1 cut(s) 473
AdeI CACNNNGTG 2 cut(s) 476, 761
AfiI CCNNNNNNNGG 1 cut(s) 993
AgsI TTSAA 8 cut(s) 163, 232, 284, 374, 539, 600, 820, 868
AjnI CCWGG 3 cut(s) 666, 739, 910
AluBI AGCT 9 cut(s) 34, 74, 95, 131, 241, 446, 481, 958, 1008
AluI AGCT 9 cut(s) 34, 74, 95, 131, 241, 446, 481, 958, 1008
Alw21I GWGCWC 4 cut(s) 36, 133, 259, 649
AlwI GGATC 2 cut(s) 541, 922
ApeKI GCWGC 5 cut(s) 629, 731, 785, 788, 1005
ApoI RAATTY 5 cut(s) 374, 744, 870, 906, 999
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 148, 737
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 5 cut(s) 307, 337, 452, 488, 934
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 148, 737
BanII GRGCYC 2 cut(s) 36, 133
BauI CACGAG 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 473
Bbv12I GWGCWC 4 cut(s) 36, 133, 259, 649
BbvI GCAGC 4 cut(s) 616, 718, 772, 775
BccI CCATC 3 cut(s) 332, 344, 497
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 668, 741, 912
BciVI GTATCC 1 cut(s) 745
BcnI CCSGG 1 cut(s) 252
BfaI CTAG 1 cut(s) 780
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 5 cut(s) 630, 732, 786, 789, 1006
BlsI GCNGC 5 cut(s) 631, 733, 787, 790, 1007
Bme1390I CCNGG 4 cut(s) 252, 668, 741, 912
Bme18I GGWCC 2 cut(s) 148, 737
BmgT120I GGNCC 2 cut(s) 148, 737
BmiI GGNNCC 2 cut(s) 150, 171
BmrFI CCNGG 4 cut(s) 252, 668, 741, 912
BmsI GCATC 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 674, 902
BpuMI CCSGG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 393, 513, 666
Bsc4I CCNNNNNNNGG 1 cut(s) 993
Bse118I RCCGGY 1 cut(s) 986
Bse1I ACTGG 1 cut(s) 902
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 3 cut(s) 668, 741, 912
BseDI CCNNGG 3 cut(s) 393, 513, 666
BseGI GGATG 2 cut(s) 502, 810
BseLI CCNNNNNNNGG 1 cut(s) 993
BseMI GCAATG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 902
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 4 cut(s) 616, 718, 772, 775
Bsh1236I CGCG 2 cut(s) 119, 137
BsiHKAI GWGCWC 4 cut(s) 36, 133, 259, 649
BsiSI CCGG 2 cut(s) 252, 987
BslFI GGGAC 2 cut(s) 367, 593
BslI CCNNNNNNNGG 1 cut(s) 993
BsmFI GGGAC 2 cut(s) 367, 593
BsmI GAATGC 3 cut(s) 227, 465, 936
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 4 cut(s) 36, 133, 259, 649
Bsp143I GATC 3 cut(s) 138, 546, 914
BspACI CCGC 3 cut(s) 135, 293, 590
BspFNI CGCG 2 cut(s) 119, 137
BspLI GGNNCC 2 cut(s) 150, 171
BspPI GGATC 2 cut(s) 541, 922
BspT104I TTCGAA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 986
BsrI ACTGG 1 cut(s) 902
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 3 cut(s) 393, 513, 666
BssMI GATC 3 cut(s) 138, 546, 914
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 3 cut(s) 668, 741, 912
Bst4CI ACNGT 2 cut(s) 394, 759
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 42, 291
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 502, 810
BstFNI CGCG 2 cut(s) 119, 137
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 141, 549, 917
BstMBI GATC 3 cut(s) 138, 546, 914
BstMWI GCNNNNNNNGC 2 cut(s) 506, 955
BstNI CCWGG 3 cut(s) 668, 741, 912
BstNSI RCATGY 2 cut(s) 125, 994
BstSCI CCNGG 4 cut(s) 250, 666, 739, 910
BstUI CGCG 2 cut(s) 119, 137
BstV1I GCAGC 4 cut(s) 616, 718, 772, 775
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuI GTATCC 1 cut(s) 745
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 502, 810
BtsIMutI CAGTG 1 cut(s) 764
Cac8I GCNNGC 2 cut(s) 42, 291
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 986
Cfr13I GGNCC 2 cut(s) 148, 737
CviAII CATG 6 cut(s) 122, 271, 431, 551, 967, 991
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 140, 548, 916
DpnII GATC 3 cut(s) 138, 546, 914
DraIII CACNNNGTG 2 cut(s) 476, 761
Ecl136II GAGCTC 2 cut(s) 34, 131
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 2 cut(s) 36, 133
Eco32I GATATC 2 cut(s) 619, 888
Eco47I GGWCC 2 cut(s) 148, 737
Eco53kI GAGCTC 2 cut(s) 34, 131
Eco72I CACGTG 1 cut(s) 473
EcoICRI GAGCTC 2 cut(s) 34, 131
EcoO109I RGGNCCY 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 744
EcoRII CCWGG 3 cut(s) 666, 739, 910
EcoRV GATATC 2 cut(s) 619, 888
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 36, 133
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 6 cut(s) 125, 274, 434, 554, 970, 994
FaqI GGGAC 2 cut(s) 367, 593
FatI CATG 6 cut(s) 121, 270, 430, 550, 966, 990
FauI CCCGC 2 cut(s) 142, 583
Fnu4HI GCNGC 5 cut(s) 630, 732, 786, 789, 1006
FokI GGATG 2 cut(s) 509, 797
FriOI GRGCYC 2 cut(s) 36, 133
Fsp4HI GCNGC 5 cut(s) 630, 732, 786, 789, 1006
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 630, 732, 786, 789, 1006
HapII CCGG 2 cut(s) 252, 987
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 125, 274, 434, 554, 970, 994
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 2 cut(s) 427, 581
HpaII CCGG 2 cut(s) 252, 987
HphI GGTGA 5 cut(s) 307, 337, 452, 488, 934
Hpy166II GTNNAC 5 cut(s) 397, 777, 850, 895, 925
Hpy188I TCNGA 3 cut(s) 452, 616, 904
Hpy188III TCNNGA 2 cut(s) 653, 749
Hpy8I GTNNAC 5 cut(s) 397, 777, 850, 895, 925
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 3 cut(s) 189, 292, 913
HpyCH4III ACNGT 2 cut(s) 394, 759
HpyCH4IV ACGT 2 cut(s) 472, 837
HpyCH4V TGCA 4 cut(s) 227, 632, 791, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 955
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 472, 837
Hsp92II CATG 6 cut(s) 125, 274, 434, 554, 970, 994
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 3 cut(s) 138, 546, 914
LmnI GCTCC 8 cut(s) 31, 39, 128, 136, 238, 254, 506, 955
Lsp1109I GCAGC 4 cut(s) 616, 718, 772, 775
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 780
MaeII ACGT 2 cut(s) 472, 837
MalI GATC 3 cut(s) 140, 548, 916
MboI GATC 3 cut(s) 138, 546, 914
MboII GAAGA 4 cut(s) 133, 272, 407, 808
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 4 cut(s) 36, 133, 259, 649
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 106, 955
MnlI CCTC 7 cut(s) 56, 139, 229, 313, 399, 649, 835
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 2 cut(s) 519, 768
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 1008
MspI CCGG 2 cut(s) 252, 987
MspR9I CCNGG 4 cut(s) 252, 668, 741, 912
Mva1269I GAATGC 3 cut(s) 227, 465, 936
MvaI CCWGG 3 cut(s) 668, 741, 912
MvnI CGCG 2 cut(s) 119, 137
MwoI GCNNNNNNNGC 2 cut(s) 506, 955
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 138, 546, 914
NlaIII CATG 6 cut(s) 125, 274, 434, 554, 970, 994
NlaIV GGNNCC 2 cut(s) 150, 171
NspI RCATGY 2 cut(s) 125, 994
NspV TTCGAA 1 cut(s) 90
PctI GAATGC 3 cut(s) 227, 465, 936
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 1 cut(s) 427
PfoI TCCNGGA 3 cut(s) 250, 739, 910
PkrI GCNGC 5 cut(s) 631, 733, 787, 790, 1007
PleI GAGTC 1 cut(s) 575
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 575
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 148
PsiI TTATAA 1 cut(s) 380
Psp124BI GAGCTC 2 cut(s) 36, 133
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 666, 739, 910
PspCI CACGTG 1 cut(s) 473
PspGI CCWGG 3 cut(s) 666, 739, 910
PspN4I GGNNCC 2 cut(s) 150, 171
PspPI GGNCC 2 cut(s) 148, 737
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 1008
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 2 cut(s) 36, 133
SaqAI TTAA 2 cut(s) 519, 768
SatI GCNGC 5 cut(s) 630, 732, 786, 789, 1006
Sau3AI GATC 3 cut(s) 138, 546, 914
Sau96I GGNCC 2 cut(s) 148, 737
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 4 cut(s) 252, 668, 741, 912
SduI GDGCHC 4 cut(s) 36, 133, 259, 649
SfaNI GCATC 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 148, 737
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 653, 881
SmoI CTYRAG 2 cut(s) 653, 881
SsiI CCGC 3 cut(s) 135, 293, 590
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 2 cut(s) 36, 133
StyD4I CCNGG 4 cut(s) 250, 666, 739, 910
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 394, 759
TaiI ACGT 2 cut(s) 475, 840
TaqI TCGA 3 cut(s) 90, 144, 917
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 519, 768
Tru9I TTAA 2 cut(s) 519, 768
TscAI CASTG 1 cut(s) 764
TseI GCWGC 5 cut(s) 629, 731, 785, 788, 1005
TspDTI ATGAA 6 cut(s) 147, 279, 287, 567, 701, 716
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 148, 737
XapI RAATTY 5 cut(s) 374, 744, 870, 906, 999
XceI RCATGY 2 cut(s) 125, 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 948
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.