MD07G1198100.v1.1

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011278
Physical Location & Seq
Reverse (-)
27649473 .. 27652901
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1198100.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGAGTTTGTAATTGTATGGACGATGGTGGAGCTCCTCCTCTCCCTCATTCTCGTCGTCGCCACAGCCTTCATTTCTGCCGTCTTCTTCGAAGCTTATCGCAGAAAAAACAACAACGCGCATGTTGAAGCTCCCGCGATCTTCGAAGACCCCAATTCGTTGAAACAGGTTCCTTGCCCTTCGATTTTTGATCCGGCGGAGAAGTATTTATCTTTGATTGTCCCTGCATTCAATGAGGAGCTTAGGCTTCCCGGAGCACTTGACGAAACCATGAATTATCTTCAACAACGTGCTGCTAAGGATAAGTCTTTTACTTATGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATTTGAATTTGTAAAGAAATACAGTGTGGATAATGTGAGGATTATCCTTCTTGGTAGAAATCATGGGAAGGGAGAAGCTATTAGAAAAGGAATGCTACATTCACGTGGTGAGCTACTTCTAATGCTGGATGCTGATGGAGCAACCAAGGTTAATGACGTAGAAAAACTTGAAAAACAGATTCATGCAGTTGCCGAACAGGATAAGTTTAGGGACTCTTCTGCTGGTAATTCAAGTTTTAGAATATCTGATATCCCCATTGCTGCATTTGGTTCTCGTGCTCATCTTGAGGGGAAAGCCCTGGCTACAAGGAAGTGGTACCGCAATTTTTTGATGAAAGGTTTTCATCTTGTGGTACTTTTGGCTGCTGGTCCCGGGATTCGGGATACACAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCTAGGAAGCTTTTCACTAACATCCGTTTGAACAGATGGTGCTTTGATGTTGAGGTGGTTTACCTGTGCAAATGGTTCAAAATTCCAATGCTTGAGATATCTGTAAGCTGGTCTGAAATTCCTGGATCCAAGGTGAACCCGTTGAGCATCCCAAATATGCTTTGGGAGCTTGTGCTCATGTCTGTTGGATATAGAACCGGCATGTGGAAAATTCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

337

Amino Acids

38.04

Weight (kDa)

9.13

Isoelectric Point (pI)

23.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 185 2.2e-22 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 684
AccII CGCG 2 cut(s) 119, 137
AciI CCGC 3 cut(s) 135, 197, 688
AclWI GGATC 3 cut(s) 185, 909, 922
AcsI RAATTY 4 cut(s) 374, 870, 906, 999
AcvI CACGTG 1 cut(s) 473
AdeI CACNNNGTG 2 cut(s) 476, 761
AfaI GTAC 2 cut(s) 686, 723
AfiI CCNNNNNNNGG 2 cut(s) 747, 993
AgsI TTSAA 9 cut(s) 128, 163, 232, 284, 374, 539, 600, 820, 868
AjnI CCWGG 2 cut(s) 666, 910
Alw21I GWGCWC 4 cut(s) 36, 259, 649, 966
AlwI GGATC 3 cut(s) 185, 909, 922
Ama87I CYCGRG 1 cut(s) 740
ApeKI GCWGC 5 cut(s) 293, 629, 731, 785, 788
ApoI RAATTY 4 cut(s) 374, 870, 906, 999
Asp700I GAANNNNTTC 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 684
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 3 cut(s) 252, 741, 742
AsuHPI GGTGA 3 cut(s) 337, 488, 934
AsuII TTCGAA 2 cut(s) 90, 144
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 1 cut(s) 737
BamHI GGATCC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 76, 153
Bbv12I GWGCWC 4 cut(s) 36, 259, 649, 966
BbvI GCAGC 5 cut(s) 280, 616, 718, 772, 775
BccI CCATC 5 cut(s) 19, 332, 344, 497, 819
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 668, 912
BciVI GTATCC 1 cut(s) 745
BcnI CCSGG 3 cut(s) 252, 741, 742
BfaI CTAG 2 cut(s) 780, 792
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 5 cut(s) 294, 630, 732, 786, 789
BlsI GCNGC 5 cut(s) 295, 631, 733, 787, 790
Bme1390I CCNGG 5 cut(s) 252, 668, 741, 742, 912
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 4 cut(s) 171, 686, 739, 916
BmrFI CCNGG 5 cut(s) 252, 668, 741, 742, 912
BmsI GCATC 2 cut(s) 487, 945
BpiI GAAGAC 2 cut(s) 76, 153
Bpu10I CCTNAGC 2 cut(s) 242, 297
Bpu14I TTCGAA 2 cut(s) 90, 144
BpuEI CTTGAG 2 cut(s) 674, 902
BpuMI CCSGG 3 cut(s) 252, 741, 742
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 4 cut(s) 513, 666, 740, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 747, 993
Bse118I RCCGGY 1 cut(s) 986
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 2 cut(s) 668, 912
BseDI CCNNGG 4 cut(s) 513, 666, 740, 918
BseGI GGATG 3 cut(s) 502, 810, 936
BseLI CCNNNNNNNGG 2 cut(s) 747, 993
BseMI GCAATG 1 cut(s) 624
BseRI GAGGAG 3 cut(s) 26, 29, 251
BseXI GCAGC 5 cut(s) 280, 616, 718, 772, 775
Bsh1236I CGCG 2 cut(s) 119, 137
BshNI GGYRCC 1 cut(s) 684
BsiHKAI GWGCWC 4 cut(s) 36, 259, 649, 966
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 4 cut(s) 194, 252, 741, 987
BslFI GGGAC 4 cut(s) 206, 367, 593, 723
BslI CCNNNNNNNGG 2 cut(s) 747, 993
BsmFI GGGAC 4 cut(s) 206, 367, 593, 723
BsmI GAATGC 2 cut(s) 227, 465
BsoBI CYCGRG 1 cut(s) 740
Bsp119I TTCGAA 2 cut(s) 90, 144
Bsp1286I GDGCHC 4 cut(s) 36, 259, 649, 966
Bsp143I GATC 3 cut(s) 138, 190, 914
BspACI CCGC 3 cut(s) 135, 197, 688
BspFNI CGCG 2 cut(s) 119, 137
BspLI GGNNCC 4 cut(s) 171, 686, 739, 916
BspPI GGATC 3 cut(s) 185, 909, 922
BspT104I TTCGAA 2 cut(s) 90, 144
BspT107I GGYRCC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 986
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 4 cut(s) 513, 666, 740, 918
BssMI GATC 3 cut(s) 138, 190, 914
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 2 cut(s) 513, 918
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 668, 912
Bst4CI ACNGT 2 cut(s) 392, 759
Bst6I CTCTTC 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 2 cut(s) 90, 144
BstDEI CTNAG 2 cut(s) 242, 297
BstF5I GGATG 3 cut(s) 502, 810, 936
BstFNI CGCG 2 cut(s) 119, 137
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 141, 193, 917
BstMBI GATC 3 cut(s) 138, 190, 914
BstMWI GCNNNNNNNGC 2 cut(s) 506, 955
BstNI CCWGG 2 cut(s) 668, 912
BstNSI RCATGY 2 cut(s) 125, 994
BstSCI CCNGG 5 cut(s) 250, 666, 739, 740, 910
BstUI CGCG 2 cut(s) 119, 137
BstV1I GCAGC 5 cut(s) 280, 616, 718, 772, 775
BstV2I GAAGAC 2 cut(s) 76, 153
BstX2I RGATCY 1 cut(s) 914
BstYI RGATCY 1 cut(s) 914
BsuI GTATCC 1 cut(s) 745
BtsCI GGATG 3 cut(s) 502, 810, 936
BtsIMutI CAGTG 2 cut(s) 397, 764
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 986
Cfr13I GGNCC 1 cut(s) 737
Cfr9I CCCGGG 1 cut(s) 740
Csp6I GTAC 2 cut(s) 685, 722
CviAII CATG 6 cut(s) 122, 271, 431, 551, 967, 991
CviQI GTAC 2 cut(s) 685, 722
DdeI CTNAG 2 cut(s) 242, 297
DpnI GATC 3 cut(s) 140, 192, 916
DpnII GATC 3 cut(s) 138, 190, 914
DraIII CACNNNGTG 2 cut(s) 476, 761
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
EciI GGCGGA 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 513, 918
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 2 cut(s) 619, 888
Eco47I GGWCC 1 cut(s) 737
Eco53kI GAGCTC 1 cut(s) 34
Eco72I CACGTG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 666, 910
EcoRV GATATC 2 cut(s) 619, 888
EcoT14I CCWWGG 2 cut(s) 513, 918
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 513, 918
FaeI CATG 6 cut(s) 125, 274, 434, 554, 970, 994
FaqI GGGAC 4 cut(s) 206, 367, 593, 723
FatI CATG 6 cut(s) 121, 270, 430, 550, 966, 990
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 294, 630, 732, 786, 789
FokI GGATG 3 cut(s) 509, 797, 923
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 294, 630, 732, 786, 789
FspBI CTAG 2 cut(s) 780, 792
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 294, 630, 732, 786, 789
HapII CCGG 4 cut(s) 194, 252, 741, 987
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 125, 274, 434, 554, 970, 994
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 93, 797
HinfI GANTC 3 cut(s) 547, 581, 745
HpaII CCGG 4 cut(s) 194, 252, 741, 987
HphI GGTGA 3 cut(s) 337, 488, 934
Hpy166II GTNNAC 3 cut(s) 777, 850, 925
Hpy188I TCNGA 2 cut(s) 616, 904
Hpy188III TCNNGA 2 cut(s) 653, 749
Hpy8I GTNNAC 3 cut(s) 777, 850, 925
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 4 cut(s) 79, 189, 425, 430
HpyCH4III ACNGT 2 cut(s) 392, 759
HpyCH4IV ACGT 3 cut(s) 289, 472, 525
HpyCH4V TGCA 4 cut(s) 227, 554, 632, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 955
HpyF3I CTNAG 2 cut(s) 242, 297
HpySE526I ACGT 3 cut(s) 289, 472, 525
Hsp92II CATG 6 cut(s) 125, 274, 434, 554, 970, 994
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 688
Kzo9I GATC 3 cut(s) 138, 190, 914
LmnI GCTCC 7 cut(s) 31, 39, 136, 238, 254, 506, 955
Lsp1109I GCAGC 5 cut(s) 280, 616, 718, 772, 775
LweI GCATC 2 cut(s) 487, 945
MaeI CTAG 2 cut(s) 780, 792
MaeII ACGT 3 cut(s) 289, 472, 525
MalI GATC 3 cut(s) 140, 192, 916
MboI GATC 3 cut(s) 138, 190, 914
MboII GAAGA 6 cut(s) 76, 79, 133, 158, 272, 576
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 4 cut(s) 36, 259, 649, 966
MluCI AATT 9 cut(s) 12, 154, 274, 374, 595, 691, 870, 906, 999
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 955
MnlI CCTC 8 cut(s) 47, 50, 56, 229, 313, 399, 649, 835
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 2 cut(s) 519, 768
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 4 cut(s) 194, 252, 741, 987
MspR9I CCNGG 5 cut(s) 252, 668, 741, 742, 912
Mva1269I GAATGC 2 cut(s) 227, 465
MvaI CCWGG 2 cut(s) 668, 912
MvnI CGCG 2 cut(s) 119, 137
MwoI GCNNNNNNNGC 2 cut(s) 506, 955
NciI CCSGG 3 cut(s) 252, 741, 742
NdeII GATC 3 cut(s) 138, 190, 914
NlaIII CATG 6 cut(s) 125, 274, 434, 554, 970, 994
NlaIV GGNNCC 4 cut(s) 171, 686, 739, 916
NspI RCATGY 2 cut(s) 125, 994
NspV TTCGAA 2 cut(s) 90, 144
PctI GAATGC 2 cut(s) 227, 465
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 2 cut(s) 547, 745
PfoI TCCNGGA 2 cut(s) 250, 910
PkrI GCNGC 5 cut(s) 295, 631, 733, 787, 790
PleI GAGTC 1 cut(s) 575
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 575
Ppu21I YACGTR 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 666, 910
PspCI CACGTG 1 cut(s) 473
PspGI CCWGG 2 cut(s) 666, 910
PspN4I GGNNCC 4 cut(s) 171, 686, 739, 916
PspPI GGNCC 1 cut(s) 737
PsuI RGATCY 1 cut(s) 914
RsaI GTAC 2 cut(s) 686, 723
RsaNI GTAC 2 cut(s) 685, 722
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 519, 768
SatI GCNGC 5 cut(s) 294, 630, 732, 786, 789
Sau3AI GATC 3 cut(s) 138, 190, 914
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 5 cut(s) 252, 668, 741, 742, 912
SduI GDGCHC 4 cut(s) 36, 259, 649, 966
SfaNI GCATC 2 cut(s) 487, 945
SfuI TTCGAA 2 cut(s) 90, 144
SinI GGWCC 1 cut(s) 737
SmaI CCCGGG 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 653, 881
SmoI CTYRAG 2 cut(s) 653, 881
Sse9I AATT 9 cut(s) 12, 154, 274, 374, 595, 691, 870, 906, 999
SsiI CCGC 3 cut(s) 135, 197, 688
SspMI CTAG 2 cut(s) 780, 792
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 250, 666, 739, 740, 910
StyI CCWWGG 2 cut(s) 513, 918
TaaI ACNGT 2 cut(s) 392, 759
TaiI ACGT 3 cut(s) 292, 475, 528
TaqI TCGA 3 cut(s) 90, 144, 182
TasI AATT 9 cut(s) 12, 154, 274, 374, 595, 691, 870, 906, 999
TfiI GAWTC 2 cut(s) 547, 745
Tru1I TTAA 2 cut(s) 519, 768
Tru9I TTAA 2 cut(s) 519, 768
TscAI CASTG 2 cut(s) 397, 764
TseI GCWGC 5 cut(s) 293, 629, 731, 785, 788
TspDTI ATGAA 5 cut(s) 61, 287, 539, 701, 716
TspGWI ACGGA 1 cut(s) 803
TspMI CCCGGG 1 cut(s) 740
TspRI CASTG 2 cut(s) 397, 764
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 4 cut(s) 374, 870, 906, 999
XceI RCATGY 2 cut(s) 125, 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 948
XmaI CCCGGG 1 cut(s) 740
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 2 cut(s) 780, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.