Rh1AG341100

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011278
Physical Location & Seq
Reverse (-)
57707247 .. 57710011
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG341100.1

Sequence Viewer

Length: 1014 bp
ATGGAGATCGTAATCGTATGGACGATGGTGGAGCTTCTGGTAGCCCTCATTCTCATCGTAGCCCTAGGTTTCGTCTCCGCAGTCTTCTTCGAAGCTCATAGAAGACGCCACAACAACGCGCACGTCGAAGCTCCGGCGATCTGCGAAGACCCGAAGTCGAGGAAACAGGGTACGTGCCCTTCGATTTACGATCCGGCGGAGAAGTATCTATCTTTGATCATCCCTGCATTCAATGAAGAGCTTAGGCTTCCTCTGGCCCTTGAGGAAACAATGAATTATCTCCAACAACGTGCAGCCAAGGATAAGTCATTTTCTTACGAGGTGGTTATCGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATATGAATTTGTAAAGAAATACACTGTAGACAATGTGAGGGTTATCCTGCTTGGAAGAAATCATGGAAAGGGAGAGGCTATCAGAAAAGGAATGCTTCATTCAAGGGGTGAGCTACTTCTAATGCTGGATGCAGATGGAGCAACAAAGGTTGATGATGTAGAAAAACTTGAAAAAAAGATCCATTCAGTTGCAAGTGAGGAATTTAAGTTTGGGGACTCACTTGCTAGTAATTCAGATTTTAGAATATCTGATATCCCAATTGCTGCATTTGGTTCCCGTGCTCATCTCGAGGAGAAGGCCTTGGCTTCAAGGAAGTGGTACCGCAATTTCTTGATGAAAGGTTTCCATCTTGTGGTTCTTTTGGCTGCTGGTCCTGGAATTCGTGATACCCAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGCTTTTCACTAACATCCGTTTGAAGAGGTGGTGCTTTGATGTTGAGTTGGTTTTCCTAGGCAATCGGTTTCGAATTCCGATGCGTGAGATATCTGTGAACTGGTCTGAAATTCCTGGGTCAAAGGTGAACCTATTAAGCATTCCAAATATGCTTTGGGAGCTTGTGCTGATGTCTGTTGGATATAGAAGCGGTATGTGGAGAATTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

337

Amino Acids

38.24

Weight (kDa)

9.14

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 183 1.8e-22 Glycosyl transferase family 2
Glyco_tranf_2_2 PF10111 83 - 185 9.6e-06 Glycosyltransferase like family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 78, 197, 691, 990
AclWI GGATC 2 cut(s) 185, 541
AcsI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 2 cut(s) 172, 689
AfiI CCNNNNNNNGG 1 cut(s) 721
AgsI TTSAA 5 cut(s) 232, 471, 539, 678, 823
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 742, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 7 cut(s) 34, 95, 131, 241, 481, 802, 961
AluI AGCT 7 cut(s) 34, 95, 131, 241, 481, 802, 961
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 185, 541
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 2 cut(s) 255, 666
ApeKI GCWGC 5 cut(s) 293, 632, 734, 788, 791
ApoI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
Asp700I GAANNNNTTC 2 cut(s) 710, 803
Asp718I GGTACC 1 cut(s) 687
AspA2I CCTAGG 2 cut(s) 64, 856
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 256, 740
AsuHPI GGTGA 2 cut(s) 488, 937
AsuII TTCGAA 2 cut(s) 90, 871
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 1 cut(s) 740
AvrII CCTAGG 2 cut(s) 64, 856
BaeGI GKGCMC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BbsI GAAGAC 3 cut(s) 76, 109, 153
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 5 cut(s) 305, 619, 721, 775, 778
BccI CCATC 5 cut(s) 19, 332, 344, 497, 723
BciT130I CCWGG 2 cut(s) 744, 915
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 4 cut(s) 65, 594, 783, 857
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 5 cut(s) 294, 633, 735, 789, 792
BlnI CCTAGG 2 cut(s) 64, 856
BlsI GCNGC 5 cut(s) 295, 634, 736, 790, 793
Bme1390I CCNGG 2 cut(s) 744, 915
Bme18I GGWCC 1 cut(s) 740
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 256, 740
BmiI GGNNCC 2 cut(s) 643, 689
BmrFI CCNGG 2 cut(s) 744, 915
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 2 cut(s) 487, 870
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 3 cut(s) 76, 109, 153
Bpu10I CCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 90, 871
BpuEI CTTGAG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 3 cut(s) 760, 905, 1008
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 744, 915
BseDI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
BseGI GGATG 3 cut(s) 219, 502, 813
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 721
BseNI ACTGG 3 cut(s) 760, 905, 1008
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 5 cut(s) 305, 619, 721, 775, 778
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 257, 668
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 652
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 2 cut(s) 134, 194
BslFI GGGAC 2 cut(s) 367, 596
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 367, 596
BsmI GAATGC 3 cut(s) 227, 465, 939
BsnI GGCC 2 cut(s) 257, 668
BsoBI CYCGRG 1 cut(s) 656
Bsp119I TTCGAA 2 cut(s) 90, 871
Bsp1286I GDGCHC 2 cut(s) 179, 652
Bsp143I GATC 5 cut(s) 6, 138, 190, 216, 546
BspACI CCGC 4 cut(s) 78, 197, 691, 990
BspANI GGCC 2 cut(s) 257, 668
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 643, 689
BspPI GGATC 2 cut(s) 185, 541
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 2 cut(s) 90, 871
BspT107I GGYRCC 1 cut(s) 687
BsrI ACTGG 3 cut(s) 760, 905, 1008
BssECI CCNNGG 5 cut(s) 64, 297, 669, 856, 914
BssMI GATC 5 cut(s) 6, 138, 190, 216, 546
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 4 cut(s) 64, 297, 669, 856
Bst2UI CCWGG 2 cut(s) 744, 915
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 231, 818
BstACI GRCGYC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 174
BstBI TTCGAA 2 cut(s) 90, 871
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 219, 502, 813
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 5 cut(s) 9, 141, 193, 219, 549
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 5 cut(s) 6, 138, 190, 216, 546
BstMWI GCNNNNNNNGC 2 cut(s) 506, 958
BstNI CCWGG 2 cut(s) 744, 915
BstSCI CCNGG 2 cut(s) 742, 913
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 179
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 5 cut(s) 305, 619, 721, 775, 778
BstV2I GAAGAC 3 cut(s) 76, 109, 153
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 2 cut(s) 257, 668
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 219, 502, 813
BtsIMutI CAGTG 2 cut(s) 390, 767
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 256, 740
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 171, 688
CviAII CATG 1 cut(s) 431
CviQI GTAC 2 cut(s) 171, 688
DdeI CTNAG 1 cut(s) 242
DpnI GATC 5 cut(s) 8, 140, 192, 218, 548
DpnII GATC 5 cut(s) 6, 138, 190, 216, 546
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 231, 818
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 231, 818
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 4 cut(s) 64, 297, 669, 856
Eco147I AGGCCT 1 cut(s) 668
Eco32I GATATC 2 cut(s) 622, 891
Eco47I GGWCC 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 2 cut(s) 747, 873
EcoRII CCWGG 2 cut(s) 742, 913
EcoRV GATATC 2 cut(s) 622, 891
EcoT14I CCWWGG 4 cut(s) 64, 297, 669, 856
ErhI CCWWGG 4 cut(s) 64, 297, 669, 856
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 1 cut(s) 434
FaiI YATR 8 cut(s) 19, 99, 370, 372, 432, 950, 984, 995
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 2 cut(s) 367, 596
FatI CATG 1 cut(s) 430
FauNDI CATATG 1 cut(s) 370
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 294, 633, 735, 789, 792
FokI GGATG 3 cut(s) 206, 509, 800
Fsp4HI GCNGC 5 cut(s) 294, 633, 735, 789, 792
FspBI CTAG 4 cut(s) 65, 594, 783, 857
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 294, 633, 735, 789, 792
HaeIII GGCC 2 cut(s) 257, 668
HapII CCGG 2 cut(s) 134, 194
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 1 cut(s) 584
HpaII CCGG 2 cut(s) 134, 194
HphI GGTGA 2 cut(s) 488, 937
Hpy166II GTNNAC 4 cut(s) 397, 780, 898, 928
Hpy188I TCNGA 5 cut(s) 452, 604, 619, 879, 907
Hpy188III TCNNGA 3 cut(s) 656, 700, 752
Hpy8I GTNNAC 4 cut(s) 397, 780, 898, 928
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 189, 658
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 3 cut(s) 123, 173, 289
HpyCH4V TGCA 6 cut(s) 227, 293, 500, 560, 635, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 958
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 3 cut(s) 123, 173, 289
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 5 cut(s) 6, 138, 190, 216, 546
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 4 cut(s) 31, 136, 506, 958
Lsp1109I GCAGC 5 cut(s) 305, 619, 721, 775, 778
LweI GCATC 2 cut(s) 487, 870
MaeI CTAG 4 cut(s) 65, 594, 783, 857
MaeII ACGT 3 cut(s) 123, 173, 289
MalI GATC 5 cut(s) 8, 140, 192, 218, 548
MboI GATC 5 cut(s) 6, 138, 190, 216, 546
MboII GAAGA 7 cut(s) 76, 79, 114, 158, 248, 435, 835
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 179, 652
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 307, 958
MroXI GAANNNNTTC 2 cut(s) 710, 803
MseI TTAA 3 cut(s) 573, 771, 935
MspI CCGG 2 cut(s) 134, 194
MspR9I CCNGG 2 cut(s) 744, 915
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 3 cut(s) 227, 465, 939
MvaI CCWGG 2 cut(s) 744, 915
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 506, 958
NdeI CATATG 1 cut(s) 370
NdeII GATC 5 cut(s) 6, 138, 190, 216, 546
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 2 cut(s) 643, 689
NspV TTCGAA 2 cut(s) 90, 871
PaeR7I CTCGAG 1 cut(s) 656
PceI AGGCCT 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 179
PctI GAATGC 3 cut(s) 227, 465, 939
PdmI GAANNNNTTC 2 cut(s) 710, 803
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 5 cut(s) 295, 634, 736, 790, 793
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
Ppu21I YACGTR 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 742, 913
PspGI CCWGG 2 cut(s) 742, 913
PspN4I GGNNCC 2 cut(s) 643, 689
PspPI GGNCC 2 cut(s) 256, 740
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 2 cut(s) 172, 689
RsaNI GTAC 2 cut(s) 171, 688
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 573, 771, 935
SatI GCNGC 5 cut(s) 294, 633, 735, 789, 792
Sau3AI GATC 5 cut(s) 6, 138, 190, 216, 546
Sau96I GGNCC 2 cut(s) 256, 740
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 744, 915
SduI GDGCHC 2 cut(s) 179, 652
SfaNI GCATC 2 cut(s) 487, 870
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 656
SfuI TTCGAA 2 cut(s) 90, 871
SinI GGWCC 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 260, 656
SmoI CTYRAG 2 cut(s) 260, 656
SseBI AGGCCT 1 cut(s) 668
SsiI CCGC 4 cut(s) 78, 197, 691, 990
SspMI CTAG 4 cut(s) 65, 594, 783, 857
StuI AGGCCT 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 742, 913
StyI CCWWGG 4 cut(s) 64, 297, 669, 856
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 3 cut(s) 126, 176, 292
TaqI TCGA 6 cut(s) 90, 126, 158, 182, 657, 871
Tru1I TTAA 3 cut(s) 573, 771, 935
Tru9I TTAA 3 cut(s) 573, 771, 935
TscAI CASTG 2 cut(s) 397, 767
TseI GCWGC 5 cut(s) 293, 632, 734, 788, 791
TspDTI ATGAA 5 cut(s) 249, 287, 387, 455, 719
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 397, 767
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 6 cut(s) 374, 569, 747, 873, 909, 1002
XcmI CCANNNNNNNNNTGG 1 cut(s) 951
XhoI CTCGAG 1 cut(s) 656
XmaJI CCTAGG 2 cut(s) 64, 856
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 2 cut(s) 710, 803
XspI CTAG 4 cut(s) 65, 594, 783, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.