Rh1CG317800

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011278
Physical Location & Seq
Reverse (-)
59334529 .. 59337244
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG317800.1

Sequence Viewer

Length: 990 bp
ATGGTGGAGCTTCTGATAGCCCTCATTCTCATCGTAGCCCTAGGTTTCGTCTCCGCAGTCTTCTTCGAAGCTCATAGAAGACGCCACAACAACGCGCACGTCGAAGCTCCGGCGATCTGCGAAGACCCGAAGTCGAGGAAACAGGTTACATGCCCTTCGATTTACGATCCGGCGGAGAAGTATCTATCTTTGATCATCCCTGCATTCAATGAAGAGCTTAGGCTTCCTCTGGCCCTTGAGGAAACAATGAATTATCTCCAACAACGTGCAGCCAAGGATAAGTCATTTTCTTATGAGGTGGTTATCGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATATGAATTTGTAAAGAAATACACTGTAGACAATGTGAGGGTTATCCTGCTTGGAAGAAATCATGGAAAGGGAGAGGCTATCAGAAAAGGAATGCTTCATTCAAGGGGTGAGCTACTTCTAATGCTGGATGCAGATGGAGCAACAAAGGTTGATGATGTAGAAAAACTTGAAAAAAAGATCCATGCAGTTGCAAGTGAGGAATTTAAGTTTGGGGACTCACCTGCTAGTAATTCAGATTTTAGAATATCTGATATCTCAATTGCTGCATTTGGTTCCCGTGCTCATCTCGAGGAGAAGGCCTTGGCTTCAAGGAAGTGGTACCGCAATTTCTTGATGAAAGGTTTCCATCTTGTGGTTCTTTTGGCTGCTGGTCCTGGAATTCGTGATACCCAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCAAGGAAGCTGTTCACTAACATCCGTTTGAAGAGGTGGTGCTTTGATGTTGAGTTGGTTTTCCTAGGCAATCGGTTTCGAATTCCGATGCGTGAGATATCTGTGAACTGGTCTGAAATTCCTGGGTCAAAGGTGAACCTACTAAGCATTCCAAATATGCTTTGGGAGCTTGTGCTGATGTCTGTTGGATATAGAAGCGGTATGTGGAGAATTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

329

Amino Acids

37.28

Weight (kDa)

9.24

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 63 - 176 1.4e-22 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 574
Acc36I ACCTGC 1 cut(s) 574
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 697
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 54, 173, 667, 966
AclWI GGATC 2 cut(s) 161, 517
AcsI RAATTY 6 cut(s) 350, 545, 723, 849, 885, 978
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 665
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 5 cut(s) 208, 447, 515, 654, 799
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 2 cut(s) 718, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 7 cut(s) 10, 71, 107, 217, 457, 778, 937
AluI AGCT 7 cut(s) 10, 71, 107, 217, 457, 778, 937
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 161, 517
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 2 cut(s) 231, 642
ApeKI GCWGC 5 cut(s) 269, 608, 710, 764, 767
ApoI RAATTY 6 cut(s) 350, 545, 723, 849, 885, 978
Asp700I GAANNNNTTC 2 cut(s) 686, 779
Asp718I GGTACC 1 cut(s) 663
AspA2I CCTAGG 2 cut(s) 40, 832
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 232, 716
AsuHPI GGTGA 3 cut(s) 464, 555, 913
AsuII TTCGAA 2 cut(s) 66, 847
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 716
AvrII CCTAGG 2 cut(s) 40, 832
BanI GGYRCC 1 cut(s) 663
BbsI GAAGAC 3 cut(s) 52, 85, 129
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 5 cut(s) 281, 595, 697, 751, 754
BccI CCATC 4 cut(s) 308, 320, 473, 699
BciT130I CCWGG 2 cut(s) 720, 891
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 4 cut(s) 41, 570, 759, 833
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 574
BisI GCNGC 5 cut(s) 270, 609, 711, 765, 768
BlnI CCTAGG 2 cut(s) 40, 832
BlsI GCNGC 5 cut(s) 271, 610, 712, 766, 769
Bme1390I CCNGG 2 cut(s) 720, 891
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 632
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 232, 716
BmiI GGNNCC 2 cut(s) 619, 665
BmrFI CCNGG 2 cut(s) 720, 891
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 2 cut(s) 463, 846
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 3 cut(s) 52, 85, 129
Bpu10I CCTNAGC 1 cut(s) 218
Bpu14I TTCGAA 2 cut(s) 66, 847
BpuEI CTTGAG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 5 cut(s) 40, 273, 645, 832, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 736, 881, 984
BseBI CCWGG 2 cut(s) 720, 891
BseDI CCNNGG 5 cut(s) 40, 273, 645, 832, 890
BseGI GGATG 3 cut(s) 195, 478, 789
BseLI CCNNNNNNNGG 1 cut(s) 697
BseNI ACTGG 3 cut(s) 736, 881, 984
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 5 cut(s) 281, 595, 697, 751, 754
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 233, 644
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 2 cut(s) 110, 170
BslFI GGGAC 2 cut(s) 343, 572
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 343, 572
BsmI GAATGC 3 cut(s) 203, 441, 915
BsnI GGCC 2 cut(s) 233, 644
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 2 cut(s) 66, 847
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 4 cut(s) 114, 166, 192, 522
BspACI CCGC 4 cut(s) 54, 173, 667, 966
BspANI GGCC 2 cut(s) 233, 644
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 619, 665
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 2 cut(s) 161, 517
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 2 cut(s) 66, 847
BspT107I GGYRCC 1 cut(s) 663
BsrI ACTGG 3 cut(s) 736, 881, 984
BssECI CCNNGG 5 cut(s) 40, 273, 645, 832, 890
BssMI GATC 4 cut(s) 114, 166, 192, 522
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 4 cut(s) 40, 273, 645, 832
Bst2UI CCWGG 2 cut(s) 720, 891
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 2 cut(s) 207, 794
BstACI GRCGYC 1 cut(s) 82
BstBI TTCGAA 2 cut(s) 66, 847
BstDEI CTNAG 2 cut(s) 218, 911
BstF5I GGATG 3 cut(s) 195, 478, 789
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 4 cut(s) 117, 169, 195, 525
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 4 cut(s) 114, 166, 192, 522
BstMWI GCNNNNNNNGC 2 cut(s) 482, 934
BstNI CCWGG 2 cut(s) 720, 891
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 718, 889
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 5 cut(s) 281, 595, 697, 751, 754
BstV2I GAAGAC 3 cut(s) 52, 85, 129
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 2 cut(s) 233, 644
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 3 cut(s) 195, 478, 789
BtsIMutI CAGTG 2 cut(s) 366, 743
BveI ACCTGC 1 cut(s) 574
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 232, 716
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 664
CviAII CATG 3 cut(s) 150, 407, 527
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 2 cut(s) 218, 911
DpnI GATC 4 cut(s) 116, 168, 194, 524
DpnII GATC 4 cut(s) 114, 166, 192, 522
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 207, 794
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 2 cut(s) 207, 794
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 4 cut(s) 40, 273, 645, 832
Eco147I AGGCCT 1 cut(s) 644
Eco32I GATATC 2 cut(s) 598, 867
Eco47I GGWCC 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 632
EcoRI GAATTC 2 cut(s) 723, 849
EcoRII CCWGG 2 cut(s) 718, 889
EcoRV GATATC 2 cut(s) 598, 867
EcoT14I CCWWGG 4 cut(s) 40, 273, 645, 832
ErhI CCWWGG 4 cut(s) 40, 273, 645, 832
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 3 cut(s) 153, 410, 530
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 2 cut(s) 343, 572
FatI CATG 3 cut(s) 149, 406, 526
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 192
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 270, 609, 711, 765, 768
FokI GGATG 3 cut(s) 182, 485, 776
Fsp4HI GCNGC 5 cut(s) 270, 609, 711, 765, 768
FspBI CTAG 4 cut(s) 41, 570, 759, 833
GlaI GCGC 1 cut(s) 96
GluI GCNGC 5 cut(s) 270, 609, 711, 765, 768
HaeIII GGCC 2 cut(s) 233, 644
HapII CCGG 2 cut(s) 110, 170
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 3 cut(s) 153, 410, 530
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 1 cut(s) 560
HpaII CCGG 2 cut(s) 110, 170
HphI GGTGA 3 cut(s) 464, 555, 913
Hpy166II GTNNAC 5 cut(s) 373, 756, 783, 874, 904
Hpy188I TCNGA 6 cut(s) 15, 428, 580, 595, 855, 883
Hpy188III TCNNGA 3 cut(s) 632, 676, 728
Hpy8I GTNNAC 5 cut(s) 373, 756, 783, 874, 904
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 165, 634
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 2 cut(s) 99, 265
HpyCH4V TGCA 7 cut(s) 203, 269, 476, 530, 536, 611, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 934
HpyF3I CTNAG 2 cut(s) 218, 911
HpySE526I ACGT 2 cut(s) 99, 265
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 3 cut(s) 153, 410, 530
HspAI GCGC 1 cut(s) 95
KpnI GGTACC 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 4 cut(s) 114, 166, 192, 522
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 4 cut(s) 7, 112, 482, 934
Lsp1109I GCAGC 5 cut(s) 281, 595, 697, 751, 754
LweI GCATC 2 cut(s) 463, 846
MaeI CTAG 4 cut(s) 41, 570, 759, 833
MaeII ACGT 2 cut(s) 99, 265
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 116, 168, 194, 524
MboI GATC 4 cut(s) 114, 166, 192, 522
MboII GAAGA 7 cut(s) 52, 55, 90, 134, 224, 411, 811
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 1 cut(s) 628
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 283, 934
MroXI GAANNNNTTC 2 cut(s) 686, 779
MseI TTAA 2 cut(s) 549, 747
MspI CCGG 2 cut(s) 110, 170
MspR9I CCNGG 2 cut(s) 720, 891
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 3 cut(s) 203, 441, 915
MvaI CCWGG 2 cut(s) 720, 891
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 482, 934
NdeI CATATG 1 cut(s) 346
NdeII GATC 4 cut(s) 114, 166, 192, 522
NlaIII CATG 3 cut(s) 153, 410, 530
NlaIV GGNNCC 2 cut(s) 619, 665
NspI RCATGY 1 cut(s) 153
NspV TTCGAA 2 cut(s) 66, 847
PaeR7I CTCGAG 1 cut(s) 632
PaqCI CACCTGC 1 cut(s) 574
PceI AGGCCT 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 3 cut(s) 203, 441, 915
PdmI GAANNNNTTC 2 cut(s) 686, 779
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 5 cut(s) 271, 610, 712, 766, 769
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 718, 889
PspGI CCWGG 2 cut(s) 718, 889
PspN4I GGNNCC 2 cut(s) 619, 665
PspPI GGNCC 2 cut(s) 232, 716
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 549, 747
SatI GCNGC 5 cut(s) 270, 609, 711, 765, 768
Sau3AI GATC 4 cut(s) 114, 166, 192, 522
Sau96I GGNCC 2 cut(s) 232, 716
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 720, 891
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 2 cut(s) 463, 846
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 632
SfuI TTCGAA 2 cut(s) 66, 847
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 236, 632
SmoI CTYRAG 2 cut(s) 236, 632
SseBI AGGCCT 1 cut(s) 644
SsiI CCGC 4 cut(s) 54, 173, 667, 966
SspMI CTAG 4 cut(s) 41, 570, 759, 833
StuI AGGCCT 1 cut(s) 644
StyD4I CCNGG 2 cut(s) 718, 889
StyI CCWWGG 4 cut(s) 40, 273, 645, 832
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 2 cut(s) 102, 268
TaqI TCGA 6 cut(s) 66, 102, 134, 158, 633, 847
Tru1I TTAA 2 cut(s) 549, 747
Tru9I TTAA 2 cut(s) 549, 747
TscAI CASTG 2 cut(s) 373, 743
TseI GCWGC 5 cut(s) 269, 608, 710, 764, 767
TspDTI ATGAA 5 cut(s) 225, 263, 363, 431, 695
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 2 cut(s) 373, 743
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 6 cut(s) 350, 545, 723, 849, 885, 978
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XhoI CTCGAG 1 cut(s) 632
XmaJI CCTAGG 2 cut(s) 40, 832
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 2 cut(s) 686, 779
XspI CTAG 4 cut(s) 41, 570, 759, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.