AT2G39725

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003139
Physical Location & Seq
Forward (+)
16569430 .. 16570748
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39725.1

Sequence Viewer

Length: 273 bp
ATGGGAGCTTCGAAACTTTCCGGGATGCAAAAGCAAGTCTTGAGTCTCTACAGAGGATTTCTAAGAGCAGCTCGTTCAAGACCAATAGAAGACAGGAAGAGAATAGAGATGATTGTGTCAACAGAGTTCCGCCACAACTCTAAGGAGGTCGACCGTAAGAATTTTCAGTACATCGAGTATTTGCTTCGGTTAGGTACTAAACAGCTTGATCAACTCAAAAGCCCTGCCATAGTTAGCCTCTCCTCGATCAAGGTCGTTACATCTAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

90

Amino Acids

10.37

Weight (kDa)

10.43

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 11 - 71 1.5e-13 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AciI CCGC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 2 cut(s) 170, 196
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 3 cut(s) 8, 71, 205
AluI AGCT 3 cut(s) 8, 71, 205
Alw26I GTCTC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 80
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 208, 246
BspACI CCGC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 11
BssMI GATC 2 cut(s) 208, 246
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 62, 141
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 2 cut(s) 211, 249
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 208, 246
BstMCI CGRYCG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 30
Csp6I GTAC 2 cut(s) 169, 195
CviJI RGCY 5 cut(s) 8, 71, 205, 222, 237
CviKI_1 RGCY 5 cut(s) 8, 71, 205, 222, 237
CviQI GTAC 2 cut(s) 169, 195
DdeI CTNAG 2 cut(s) 62, 141
DpnI GATC 2 cut(s) 210, 248
DpnII GATC 2 cut(s) 208, 246
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 119
FaiI YATR 1 cut(s) 230
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HapII CCGG 1 cut(s) 21
HincII GTYRAC 2 cut(s) 120, 151
HindII GTYRAC 2 cut(s) 120, 151
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 120, 151
Hpy188III TCNNGA 2 cut(s) 40, 78
Hpy8I GTNNAC 2 cut(s) 120, 151
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 62, 141
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 246
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 34, 79, 237
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 210, 248
MboI GATC 2 cut(s) 208, 246
MboII GAAGA 2 cut(s) 101, 109
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 4 cut(s) 47, 139, 248, 253
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 22
NciI CCSGG 1 cut(s) 22
NdeII GATC 2 cut(s) 208, 246
NspV TTCGAA 1 cut(s) 11
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
RsaI GTAC 2 cut(s) 170, 196
RsaNI GTAC 2 cut(s) 169, 195
SalI GTCGAC 1 cut(s) 149
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 208, 246
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 22
SetI ASST 7 cut(s) 10, 73, 150, 196, 207, 255, 272
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 160
SsiI CCGC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 11, 150, 174, 245
TasI AATT 1 cut(s) 160
TatI WGTACW 1 cut(s) 168
TseI GCWGC 1 cut(s) 68
XapI RAATTY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.