Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003139

Physical Location & Seq

Genomic Coordinates Forward (+)

683911 .. 687767

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGAGCCTCCAGAGGACCAAGGCTTTCTGGGATGCAGAAACAAGTCCTTAGTCTATACAGAGGGTTTCTGAGGGCAGCCCGTGCAAAATCTGCTGAAGATCGACAGCAGATTGAGTCACTTGTGTCAAGTGAGTTCCGCCGCAATGCCAAGGAGGTAGACCGCAAAAATTTCCTTTACATTGAGTACTTGCTTCGCCGTGCTAAGAAACAGCTTGATCAGCTCAGGAGCCCCGATGTTGTTGGATTATCAGCCCTGAATGTCAGTTTCTCGCAGACAAAACATCCTACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

10.72

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39725 AT2G39725
malus_domestica	MD10G1006000.v1.1
prunus_persica	Prupe.8G008400_v2.0.a1 Prupe.8G008800_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1
pyrus_communis	pycom10g00430
rosa_chinensis	RchiOBHm_Chr6g0251481 RchiOBHm_Chr7g0212501 RchiOBHm_Chr7g0212551 RchiOBHm_Chr7g0212661
rosa_laevigata	RLG00000002876
rosa_multiflora	Rmu_sc0000394.1_g000013 Rmu_sc0007576.1_g000018 Rmu_sc0041302.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246640 Rroxscaffold_3G00246680 Rroxscaffold_3G00246730
rosa_rugosa	Rorug07G0134800 Rorug07G0135300 Rorug07G0135700
rosa_samantha	Rh7BG261500 Rh7BG262300 Rh7BG263000 Rh7CG284300 Rh7CG284500 Rh7DG274300 Rh7DG274500 Rh7DG275400
rosa_wichuraiana	Rw7G022900 Rw7G022930 Rw7G022970 Rw7G023040 Rw7G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	3 cut(s)	139, 142, 163
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	188
AluBI	AGCT	2 cut(s)	214, 223
AluI	AGCT	2 cut(s)	214, 223
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	217
BisI	GCNGC	2 cut(s)	78, 142
BlsI	GCNGC	2 cut(s)	79, 143
BmcAI	AGTACT	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	7, 230
BmsI	GCATC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	20, 150
Bse3DI	GCAATG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	20, 150
BseGI	GGATG	2 cut(s)	39, 283
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	62, 238
BseXI	GCAGC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	100, 217
BspACI	CCGC	3 cut(s)	139, 142, 163
BspCNI	CTCAG	2 cut(s)	63, 237
BspLI	GGNNCC	2 cut(s)	7, 230
BsrDI	GCAATG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	20, 150
BssMI	GATC	2 cut(s)	100, 217
BssT1I	CCWWGG	2 cut(s)	20, 150
BstAPI	GCANNNNNTGC	2 cut(s)	83, 92
BstDEI	CTNAG	4 cut(s)	50, 71, 204, 224
BstF5I	GGATG	2 cut(s)	39, 283
BstKTI	GATC	2 cut(s)	103, 220
BstMBI	GATC	2 cut(s)	100, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 92, 220
BstV1I	GCAGC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	39, 283
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	187
CviJI	RGCY	7 cut(s)	8, 25, 80, 214, 223, 231, 254
CviKI_1	RGCY	7 cut(s)	8, 25, 80, 214, 223, 231, 254
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	50, 71, 204, 224
DpnI	GATC	2 cut(s)	102, 219
DpnII	GATC	2 cut(s)	100, 217
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	20, 150
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	20, 150
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	20, 150
FaiI	YATR	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	78, 142
FokI	GGATG	2 cut(s)	46, 270
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	78, 142
GluI	GCNGC	2 cut(s)	78, 142
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	12, 226
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	37, 86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 92, 220
HpyF3I	CTNAG	4 cut(s)	50, 71, 204, 224
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	100, 217
LmnI	GCTCC	2 cut(s)	5, 228
LpnPI	CCDG	4 cut(s)	15, 25, 211, 269
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	102, 219
MboI	GATC	2 cut(s)	100, 217
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	2 cut(s)	169, 292
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	8, 19, 56, 66, 148
MwoI	GCNNNNNNNGC	3 cut(s)	83, 92, 220
NdeII	GATC	2 cut(s)	100, 217
NlaIV	GGNNCC	2 cut(s)	7, 230
NmuCI	GTSAC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	79, 143
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	7, 230
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	2 cut(s)	78, 142
Sau3AI	GATC	2 cut(s)	100, 217
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	3 cut(s)	159, 216, 225
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	169, 292
SsiI	CCGC	3 cut(s)	139, 142, 163
StyI	CCWWGG	2 cut(s)	20, 150
TaqI	TCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	169, 292
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.