Rorug07G0135700

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003139
Physical Location & Seq
Reverse (-)
10649449 .. 10651888
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0135700.1

Sequence Viewer

Length: 1209 bp
ATGGCGACGATCAATCTTCTTCTCTCTTTTCTCTGCATTCTCACCACCACCGCCCTTTCACAACCAACCATTGCTCCGCCGTACTCTCAAGAACCCATCGATGCCGCCACCCCCATCTCTCCAGCCTCTTCTTCTCCTCCTTCAATCTCCCCAACCCCACCACCGGCCTCAATCCCACCCAAGACTCCTCTCGTCCCTGCCCTCTTCGTCATCGGCGACTCCTCCGTCGACTCCGGCACCAACAATTTCCTCGGGACTTTCGCACGCGCCGACCGCCTCCCCTACGGCCGCGATTTCGACACGCACGAGCCCACTGGGCGGTTCTGCAATGGCAGAACCCCAGTCGATTATATTGCATTGCGGCTTGGGCTTCCTTTTGTACCCAGTTTTCTTGGGCAGACTGGAAGAGTGGAAGATATGCTTCATGGATTGAACTTTGCTTCTGCTGCTGCTGGAATTATATTCACCAGTGGGTCAGAATTGGGTCAACATGTTTCCTTGTCTCAGCAAATTCAGCAGTTTACAGATACTTACGAGCAGTTTGTGTTGAGTATGGGGCAGCAAGCTGCGATTAATCTCATCTCGAATTCGGTGCTCTACATTTCAATCGGAATCAATGACTACATACATTACTACTTGCGTAATGAGTCGAACGTGCAAAATCTCTATTTGCCCTGGAGTTTCAATCGATTTCTAGCATCCACGGTGACGCAGGAAATCAAGAACTTGTATAGAATTAATGTCAGGAAGGTGGTTGTGATGGGTCTGCCACCTATAGGTTGTGCTCCTCACTACTTATGTGAGTACAAAGTGAAGGATGGACAATGTGTTGAGGAGATAAACAACATGGTATTGGAGTTCAACTTTATCATGAGGTATATGATTGAAGAGCTAAGTGAAGCGCTTCCGTATTCCCATATCATCTTCTGTGATGTGTTCCAAGGATCCATGGATATGTTAAAGAACTCTGAACGTTACGGTTTCAAAGTCACCACCGATGCTTGCTGCGGATTAGGCGACTACAAGGGTTTTCTCATGTGCTTATCACCAGACATGGCTTGCAGTAATGCATCTGACCATATCTGGTGGGACCAATTCCATCCAACTGATGCAGTTAATGCCATTCTGGCTGATAATGTCTGGAATGGCCTGCACACGAAAATGTGCTATCCAATGAACTTGGAGGATGTGGTAGCCAATACATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

402

Amino Acids

44.57

Weight (kDa)

4.91

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 68 - 379 1.3e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 267, 291
AciI CCGC 8 cut(s) 51, 77, 105, 274, 289, 319, 361, 1008
AclI AACGTT 1 cut(s) 973
AclWI GGATC 2 cut(s) 939, 952
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 510, 586
AfaI GTAC 3 cut(s) 83, 381, 806
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 3 cut(s) 163, 318, 776
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 7 cut(s) 144, 433, 606, 685, 862, 887, 985
AjnI CCWGG 1 cut(s) 674
AluBI AGCT 2 cut(s) 566, 892
AluI AGCT 2 cut(s) 566, 892
Alw21I GWGCWC 2 cut(s) 597, 787
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 2 cut(s) 939, 952
Ama87I CYCGRG 1 cut(s) 251
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 3 cut(s) 165, 286, 1147
ApeKI GCWGC 5 cut(s) 446, 449, 559, 566, 1005
ApoI RAATTY 2 cut(s) 510, 586
AseI ATTAAT 2 cut(s) 573, 738
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 2 cut(s) 269, 904
AspS9I GGNCC 1 cut(s) 1090
AsuHPI GGTGA 5 cut(s) 34, 457, 718, 982, 1038
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 1090
BamHI GGATCC 1 cut(s) 944
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 312
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 597, 787
BbvI GCAGC 5 cut(s) 433, 436, 553, 571, 992
BccI CCATC 5 cut(s) 104, 122, 754, 812, 1107
BceAI ACGGC 2 cut(s) 64, 301
BcgI CGANNNNNNTGC 4 cut(s) 335, 369, 574, 608
BciT130I CCWGG 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 905
BglI GCCNNNNNGGC 2 cut(s) 316, 1127
BisI GCNGC 8 cut(s) 105, 289, 362, 447, 450, 560, 567, 1006
BlsI GCNGC 8 cut(s) 106, 290, 363, 448, 451, 561, 568, 1007
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 1090
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 3 cut(s) 238, 946, 1091
BmrFI CCNGG 1 cut(s) 676
BmrI ACTGGG 3 cut(s) 324, 335, 378
BmsI GCATC 5 cut(s) 91, 707, 988, 1079, 1099
BmuI ACTGGG 3 cut(s) 324, 335, 378
BpmI CTGGAG 2 cut(s) 105, 697
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 2 cut(s) 99, 688
BsaJI CCNNGG 5 cut(s) 250, 674, 702, 940, 948
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 318, 776
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 5 cut(s) 319, 341, 384, 406, 468
Bse3DI GCAATG 3 cut(s) 69, 334, 356
BseBI CCWGG 1 cut(s) 676
BseCI ATCGAT 2 cut(s) 99, 688
BseDI CCNNGG 5 cut(s) 250, 674, 702, 940, 948
BseGI GGATG 4 cut(s) 698, 823, 1099, 1192
BseLI CCNNNNNNNGG 3 cut(s) 163, 318, 776
BseMI GCAATG 3 cut(s) 69, 334, 356
BseMII CTCAG 1 cut(s) 518
BseNI ACTGG 5 cut(s) 319, 341, 384, 406, 468
BseRI GAGGAG 5 cut(s) 126, 177, 211, 777, 848
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 5 cut(s) 433, 436, 553, 571, 992
BsgI GTGCAG 1 cut(s) 1136
Bsh1236I CGCG 2 cut(s) 267, 291
Bsh1285I CGRYCG 2 cut(s) 274, 289
BshFI GGCC 3 cut(s) 167, 288, 1149
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 2 cut(s) 99, 688
BsiEI CGRYCG 2 cut(s) 274, 289
BsiHKAI GWGCWC 2 cut(s) 597, 787
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 164, 234
BslFI GGGAC 3 cut(s) 179, 268, 1103
BslI CCNNNNNNNGG 3 cut(s) 163, 318, 776
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 3 cut(s) 179, 268, 1103
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 3 cut(s) 167, 288, 1149
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 312, 597, 787
Bsp143I GATC 2 cut(s) 9, 944
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 8 cut(s) 51, 77, 105, 274, 289, 319, 361, 1008
BspANI GGCC 3 cut(s) 167, 288, 1149
BspCNI CTCAG 1 cut(s) 517
BspDI ATCGAT 2 cut(s) 99, 688
BspFNI CGCG 2 cut(s) 267, 291
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 3 cut(s) 238, 946, 1091
BspPI GGATC 2 cut(s) 939, 952
BspQI GCTCTTC 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 3 cut(s) 69, 334, 356
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 5 cut(s) 319, 341, 384, 406, 468
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 5 cut(s) 250, 674, 702, 940, 948
BssMI GATC 2 cut(s) 9, 944
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 940, 948
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 2 cut(s) 706, 980
Bst6I CTCTTC 4 cut(s) 133, 209, 400, 882
BstAPI GCANNNNNTGC 1 cut(s) 1118
BstC8I GCNNGC 5 cut(s) 265, 564, 1003, 1060, 1151
BstDEI CTNAG 2 cut(s) 504, 893
BstDSI CCRYGG 2 cut(s) 702, 948
BstF5I GGATG 4 cut(s) 698, 823, 1099, 1192
BstFNI CGCG 2 cut(s) 267, 291
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 2 cut(s) 269, 904
BstKTI GATC 2 cut(s) 12, 947
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 2 cut(s) 9, 944
BstMCI CGRYCG 2 cut(s) 274, 289
BstMWI GCNNNNNNNGC 8 cut(s) 273, 316, 367, 446, 514, 1014, 1118, 1127
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 674
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 2 cut(s) 267, 291
BstV1I GCAGC 5 cut(s) 433, 436, 553, 571, 992
BstX2I RGATCY 1 cut(s) 944
BstYI RGATCY 1 cut(s) 944
BstZI CGGCCG 1 cut(s) 286
Bsu15I ATCGAT 2 cut(s) 99, 688
BsuRI GGCC 3 cut(s) 167, 288, 1149
BsuTUI ATCGAT 2 cut(s) 99, 688
BtgI CCRYGG 2 cut(s) 702, 948
BtsCI GGATG 4 cut(s) 698, 823, 1099, 1192
BtsIMutI CAGTG 2 cut(s) 312, 475
Cac8I GCNNGC 5 cut(s) 265, 564, 1003, 1060, 1151
CciI TCATGA 1 cut(s) 870
CfoI GCGC 2 cut(s) 269, 904
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 1090
ClaI ATCGAT 2 cut(s) 99, 688
CseI GACGC 1 cut(s) 718
Csp6I GTAC 3 cut(s) 82, 380, 805
CviAII CATG 7 cut(s) 425, 491, 847, 871, 949, 1036, 1054
CviQI GTAC 3 cut(s) 82, 380, 805
DdeI CTNAG 2 cut(s) 504, 893
DpnI GATC 2 cut(s) 11, 946
DpnII GATC 2 cut(s) 9, 944
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 286
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 4 cut(s) 133, 209, 400, 882
EarI CTCTTC 4 cut(s) 133, 209, 400, 882
EciI GGCGGA 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 940, 948
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 1090
Eco47III AGCGCT 1 cut(s) 903
Eco52I CGGCCG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 674
EcoT14I CCWWGG 2 cut(s) 940, 948
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 940, 948
FaeI CATG 7 cut(s) 428, 494, 850, 874, 952, 1039, 1057
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 3 cut(s) 179, 268, 1103
FatI CATG 7 cut(s) 424, 490, 846, 870, 948, 1035, 1053
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 8 cut(s) 105, 289, 362, 447, 450, 560, 567, 1006
FokI GGATG 4 cut(s) 685, 830, 1086, 1199
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 8 cut(s) 105, 289, 362, 447, 450, 560, 567, 1006
FspBI CTAG 1 cut(s) 695
GlaI GCGC 2 cut(s) 268, 903
GluI GCNGC 8 cut(s) 105, 289, 362, 447, 450, 560, 567, 1006
GsuI CTGGAG 2 cut(s) 105, 697
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 3 cut(s) 167, 288, 1149
HapII CCGG 2 cut(s) 164, 234
HgaI GACGC 1 cut(s) 718
HhaI GCGC 2 cut(s) 269, 904
Hin1II CATG 7 cut(s) 428, 494, 850, 874, 952, 1039, 1057
Hin6I GCGC 2 cut(s) 267, 902
HinP1I GCGC 2 cut(s) 267, 902
HincII GTYRAC 2 cut(s) 229, 488
HindII GTYRAC 2 cut(s) 229, 488
HinfI GANTC 5 cut(s) 184, 218, 230, 612, 647
HpaII CCGG 2 cut(s) 164, 234
HphI GGTGA 5 cut(s) 34, 457, 718, 982, 1038
Hpy166II GTNNAC 3 cut(s) 229, 488, 522
Hpy188I TCNGA 4 cut(s) 478, 611, 970, 1075
Hpy188III TCNNGA 7 cut(s) 89, 253, 583, 721, 745, 871, 1141
Hpy8I GTNNAC 3 cut(s) 229, 488, 522
Hpy99I CGWCG 2 cut(s) 10, 230
HpyAV CCTTC 3 cut(s) 150, 742, 808
HpyCH4III ACNGT 2 cut(s) 706, 980
HpyCH4IV ACGT 2 cut(s) 654, 973
HpyCH4V TGCA 8 cut(s) 36, 327, 356, 658, 1062, 1070, 1112, 1153
HpyF10VI GCNNNNNNNGC 8 cut(s) 273, 316, 367, 446, 514, 1014, 1118, 1127
HpyF3I CTNAG 2 cut(s) 504, 893
HpySE526I ACGT 2 cut(s) 654, 973
Hsp92II CATG 7 cut(s) 428, 494, 850, 874, 952, 1039, 1057
HspAI GCGC 2 cut(s) 267, 902
Kzo9I GATC 2 cut(s) 9, 944
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 2 cut(s) 79, 790
Lsp1109I GCAGC 5 cut(s) 433, 436, 553, 571, 992
LweI GCATC 5 cut(s) 91, 707, 988, 1079, 1099
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 654, 973
MaeIII GTNAC 3 cut(s) 706, 974, 988
MalI GATC 2 cut(s) 11, 946
MboI GATC 2 cut(s) 9, 944
MboII GAAGA 9 cut(s) 8, 11, 120, 123, 196, 417, 425, 899, 916
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 3 cut(s) 312, 597, 787
MluCI AATT 7 cut(s) 244, 456, 479, 510, 586, 735, 1094
MlyI GAGTC 4 cut(s) 178, 212, 224, 656
MmeI TCCRAC 1 cut(s) 1127
Mph1103I ATGCAT 1 cut(s) 1072
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 4 cut(s) 573, 738, 959, 1116
MslI CAYNNNNRTG 2 cut(s) 953, 1160
MspI CCGG 2 cut(s) 164, 234
MspR9I CCNGG 1 cut(s) 676
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 2 cut(s) 267, 291
MwoI GCNNNNNNNGC 8 cut(s) 273, 316, 367, 446, 514, 1014, 1118, 1127
NcoI CCATGG 1 cut(s) 948
NdeII GATC 2 cut(s) 9, 944
NlaIII CATG 7 cut(s) 428, 494, 850, 874, 952, 1039, 1057
NlaIV GGNNCC 3 cut(s) 238, 946, 1091
NmuCI GTSAC 2 cut(s) 706, 988
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 1 cut(s) 494
PagI TCATGA 1 cut(s) 870
PciI ACATGT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 882
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 267, 303
PctI GAATGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 1 cut(s) 612
PkrI GCNGC 8 cut(s) 106, 290, 363, 448, 451, 561, 568, 1007
PleI GAGTC 4 cut(s) 178, 212, 224, 655
PpsI GAGTC 4 cut(s) 178, 212, 224, 655
PscI ACATGT 1 cut(s) 490
PshBI ATTAAT 2 cut(s) 573, 738
Psp1406I AACGTT 1 cut(s) 973
Psp6I CCWGG 1 cut(s) 674
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 3 cut(s) 238, 946, 1091
PspPI GGNCC 1 cut(s) 1090
PsuI RGATCY 1 cut(s) 944
RsaI GTAC 3 cut(s) 83, 381, 806
RsaNI GTAC 3 cut(s) 82, 380, 805
RseI CAYNNNNRTG 2 cut(s) 953, 1160
SalI GTCGAC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 573, 738, 959, 1116
SatI GCNGC 8 cut(s) 105, 289, 362, 447, 450, 560, 567, 1006
Sau3AI GATC 2 cut(s) 9, 944
Sau96I GGNCC 1 cut(s) 1090
SchI GAGTC 4 cut(s) 178, 212, 224, 656
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 3 cut(s) 312, 597, 787
SetI ASST 8 cut(s) 568, 657, 753, 775, 781, 878, 894, 976
SfaNI GCATC 5 cut(s) 91, 707, 988, 1079, 1099
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 953, 1160
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 7 cut(s) 244, 456, 479, 510, 586, 735, 1094
SsiI CCGC 8 cut(s) 51, 77, 105, 274, 289, 319, 361, 1008
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 674
StyI CCWWGG 2 cut(s) 940, 948
TaaI ACNGT 2 cut(s) 706, 980
TaiI ACGT 2 cut(s) 657, 976
TaqI TCGA 7 cut(s) 99, 228, 297, 345, 584, 650, 688
TasI AATT 7 cut(s) 244, 456, 479, 510, 586, 735, 1094
TatI WGTACW 1 cut(s) 804
TauI GCSGC 3 cut(s) 107, 291, 364
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 4 cut(s) 573, 738, 959, 1116
Tru9I TTAA 4 cut(s) 573, 738, 959, 1116
TscAI CASTG 2 cut(s) 319, 475
TseFI GTSAC 2 cut(s) 706, 988
TseI GCWGC 5 cut(s) 446, 449, 559, 566, 1005
Tsp45I GTSAC 2 cut(s) 706, 988
TspDTI ATGAA 2 cut(s) 413, 1190
TspGWI ACGGA 2 cut(s) 214, 897
TspRI CASTG 2 cut(s) 319, 475
VpaK11BI GGWCC 1 cut(s) 1090
VspI ATTAAT 2 cut(s) 573, 738
XapI RAATTY 2 cut(s) 510, 586
XceI RCATGY 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.