Rw7G022930

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003139
Physical Location & Seq
Forward (+)
27329382 .. 27331260
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022930.1

Sequence Viewer

Length: 294 bp
ATGGGAGCCTCCAGTGGGCCTAGGCTTTCCGGAATGCAGAGACAAGTACTTAGTCTATACAGAGGGTTCTTGCGGGCAGCTCGTTTAAAATTTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCGAATGAGTTCTGCCACAATGCCAAGAATGTAGTCCGCAAGAATTTTATTTACATTGAGTACTTGGTTCGCCGTGGAAGGAAACAGATTGATCAGCTCAAGAGCCCTGATACTGTTGGATTATCAGCCCTGAATTGTAGTCAGTTGCATAGCGCAAACTGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

97

Amino Acids

11.02

Weight (kDa)

10.11

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 73 4.4e-09 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 2 cut(s) 73, 163
AcsI RAATTY 2 cut(s) 89, 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 48, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AluBI AGCT 2 cut(s) 80, 223
AluI AGCT 2 cut(s) 80, 223
Alw26I GTCTC 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 89, 169
Asp700I GAANNNNTTC 1 cut(s) 134
AspA2I CCTAGG 1 cut(s) 20
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 183
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 78
BlnI CCTAGG 1 cut(s) 20
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 2 cut(s) 48, 188
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 20, 199
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 20, 199
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 29
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 2 cut(s) 73, 163
BspANI GGCC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 20, 199
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 47, 187
CviJI RGCY 7 cut(s) 8, 19, 25, 80, 223, 231, 254
CviKI_1 RGCY 7 cut(s) 8, 19, 25, 80, 223, 231, 254
CviQI GTAC 2 cut(s) 47, 187
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 2 cut(s) 58, 276
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 281
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 30, 226
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 37, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 50
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 25, 43, 246, 269
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 3 cut(s) 89, 169, 259
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 19, 56
MroI TCCGGA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 86
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 2 cut(s) 48, 188
RsaNI GTAC 2 cut(s) 47, 187
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 48, 188
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 233
SetI ASST 2 cut(s) 82, 225
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 3 cut(s) 89, 169, 259
SsiI CCGC 2 cut(s) 73, 163
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 103, 128
TasI AATT 3 cut(s) 89, 169, 259
TatI WGTACW 2 cut(s) 46, 186
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 19
XapI RAATTY 2 cut(s) 89, 169
XmaJI CCTAGG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.