Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041302.1

Orthogroup ID

OG0003139

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 356

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041302.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgggagccgccagtgggccacggctttctggaatgcggagacaagtacttagtctatacagagggttcttgcgggcagctcgtttaaaatctgctgaagatcgacacaagattgagtcacttgtgtccaacgagttccaccacaatgccaagaatgtagaccgcaagaattttccttacattgagtacttggttcgccgcgtaaggaaacagcttgatcagctcaagagccctgatacttttggattatcagctctgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

87

Amino Acids

10.03

Weight (kDa)

10.69

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39725 AT2G39725
malus_domestica	MD10G1006000.v1.1
prunus_persica	Prupe.8G008400_v2.0.a1 Prupe.8G008800_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1 Prupe.8G009200_v2.0.a1
pyrus_communis	pycom10g00430
rosa_chinensis	RchiOBHm_Chr6g0251481 RchiOBHm_Chr7g0212501 RchiOBHm_Chr7g0212551 RchiOBHm_Chr7g0212661
rosa_laevigata	RLG00000002876
rosa_multiflora	Rmu_sc0000394.1_g000013 Rmu_sc0007576.1_g000018 Rmu_sc0041302.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246640 Rroxscaffold_3G00246680 Rroxscaffold_3G00246730
rosa_rugosa	Rorug07G0134800 Rorug07G0135300 Rorug07G0135700
rosa_samantha	Rh7BG261500 Rh7BG262300 Rh7BG263000 Rh7CG284300 Rh7CG284500 Rh7DG274300 Rh7DG274500 Rh7DG275400
rosa_wichuraiana	Rw7G022900 Rw7G022930 Rw7G022970 Rw7G023040 Rw7G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	201
AciI	CCGC	5 cut(s)	9, 37, 73, 163, 199
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	48, 188
AfiI	CCNNNNNNNGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	80, 214, 223, 254
AluI	AGCT	4 cut(s)	80, 214, 223, 254
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	3 cut(s)	9, 78, 199
BlsI	GCNGC	3 cut(s)	10, 79, 200
BmcAI	AGTACT	2 cut(s)	48, 188
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	100, 217
BspACI	CCGC	5 cut(s)	9, 37, 73, 163, 199
BspANI	GGCC	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	100, 217
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	103, 220
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	100, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	47, 187
CviJI	RGCY	8 cut(s)	8, 19, 25, 80, 214, 223, 231, 254
CviKI_1	RGCY	8 cut(s)	8, 19, 25, 80, 214, 223, 231, 254
CviQI	GTAC	2 cut(s)	47, 187
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	102, 219
DpnII	GATC	2 cut(s)	100, 217
DraI	TTTAAA	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	233
FaiI	YATR	1 cut(s)	58
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	9, 78, 199
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	9, 78, 199
GluI	GCNGC	3 cut(s)	9, 78, 199
HaeIII	GGCC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	30, 226
Hpy8I	GTNNAC	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	100, 217
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	15, 25, 246
Lsp1109I	GCAGC	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	102, 219
MboI	GATC	2 cut(s)	100, 217
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	39
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	2 cut(s)	100, 217
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	10, 79, 200
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	48, 188
RsaNI	GTAC	2 cut(s)	47, 187
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	9, 78, 199
Sau3AI	GATC	2 cut(s)	100, 217
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	2 cut(s)	48, 188
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	4 cut(s)	82, 216, 225, 256
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	5 cut(s)	9, 37, 73, 163, 199
TaqI	TCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	169
TatI	WGTACW	2 cut(s)	46, 186
TauI	GCSGC	2 cut(s)	11, 201
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	117
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	159
ZrmI	AGTACT	2 cut(s)	48, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.