Prupe.8G008800_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003139
Physical Location & Seq
Forward (+)
655501 .. 656707
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G008800.1

Sequence Viewer

Length: 258 bp
ATGGGAGCCTCAAGGGGACCAAGGTTTTCCGGGATGCAGAAACAAGTCCTTAGTCTATACAGAGGGTTTCTGAGGGCAGCCCGTGCGAAATCTGCTGAAGATCGACAGCAGATTGAGTCACTTGTGTCAAGTGAGTTCCGCCGCAATGCCAAGGAGGTAGACCGCAAAAATTTCCTTTACATTGAGTACTTGCTTCGCCGCGCTAAGAAACAGCTTGATCAGCTCGGAGCCCCGATGTTGTTGGATTATCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

86

Amino Acids

9.89

Weight (kDa)

10.32

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AciI CCGC 4 cut(s) 139, 142, 163, 199
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 188
AluBI AGCT 2 cut(s) 214, 223
AluI AGCT 2 cut(s) 214, 223
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 31
BisI GCNGC 3 cut(s) 78, 142, 199
BlsI GCNGC 3 cut(s) 79, 143, 200
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 3 cut(s) 7, 18, 229
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 20, 150
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 20, 150
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 4 cut(s) 139, 142, 163, 199
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 7, 18, 229
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 20, 150
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 2 cut(s) 20, 150
BstAPI GCANNNNNTGC 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 50, 71, 204
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 103, 220
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 3 cut(s) 83, 92, 220
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 39
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 6 cut(s) 8, 80, 214, 223, 230, 253
CviKI_1 RGCY 6 cut(s) 8, 80, 214, 223, 230, 253
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 50, 71, 204
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 20, 150
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 20, 150
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 20, 150
FaiI YATR 1 cut(s) 58
FaqI GGGAC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 78, 142, 199
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 78, 142, 199
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 78, 142, 199
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 72, 227
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 92, 220
HpyF3I CTNAG 3 cut(s) 50, 71, 204
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 2 cut(s) 5, 227
LpnPI CCDG 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 4 cut(s) 19, 56, 66, 148
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 83, 92, 220
NciI CCSGG 1 cut(s) 31
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 3 cut(s) 7, 18, 229
NmuCI GTSAC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 3 cut(s) 79, 143, 200
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 3 cut(s) 7, 18, 229
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 78, 142, 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 232
SetI ASST 4 cut(s) 26, 159, 216, 225
SfaNI GCATC 1 cut(s) 24
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 1 cut(s) 169
SsiI CCGC 4 cut(s) 139, 142, 163, 199
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 2 cut(s) 20, 150
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 186
TauI GCSGC 2 cut(s) 144, 201
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.