Rh7DG274300

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003139
Physical Location & Seq
Forward (+)
29513398 .. 29514001
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG274300.1

Sequence Viewer

Length: 285 bp
ATGGGAGCCTCCAGTGGGCCTAGGCTTTCCGGAATGCAGAGACAAGTACTTAGTCTGTACAGAGGGTTCTTGCGGGCAGCTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCGAATGAGTTCCGCCACAATGCCAGGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGCGGAAGGAAACAGCTTGATCAGCTCAAGAGCCCCGATACTGTTGGATTATCAGCCCTGAATACAATAAGAAAGCCTAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

94

Amino Acids

10.88

Weight (kDa)

11.32

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 74 3.7e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 5 cut(s) 73, 139, 163, 199, 201
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 3 cut(s) 48, 59, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 80, 214, 223
AluI AGCT 3 cut(s) 80, 214, 223
Alw26I GTCTC 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 134
AspA2I CCTAGG 2 cut(s) 20, 275
AspS9I GGNCC 1 cut(s) 17
AvrII CCTAGG 2 cut(s) 20, 275
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 21, 276
BisI GCNGC 2 cut(s) 78, 199
BlnI CCTAGG 2 cut(s) 20, 275
BlsI GCNGC 2 cut(s) 79, 200
BmcAI AGTACT 2 cut(s) 48, 188
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 20, 199, 275
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 20, 199, 275
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 5 cut(s) 73, 139, 163, 199, 201
BspANI GGCC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 20, 199, 275
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 2 cut(s) 20, 275
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 19, 280
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 17
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 3 cut(s) 47, 58, 187
CviJI RGCY 9 cut(s) 8, 19, 25, 80, 214, 223, 231, 254, 274
CviKI_1 RGCY 9 cut(s) 8, 19, 25, 80, 214, 223, 231, 254, 274
CviQI GTAC 3 cut(s) 47, 58, 187
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 20, 275
Eco24I GRGCYC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 20, 275
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 20, 275
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 78, 199
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 78, 199
FspBI CTAG 2 cut(s) 21, 276
GluI GCNGC 2 cut(s) 78, 199
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 30
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 30, 226
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 25, 43, 136, 163, 269
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 21, 276
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 19, 56
MroI TCCGGA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 79, 200
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 17
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
RsaI GTAC 3 cut(s) 48, 59, 188
RsaNI GTAC 3 cut(s) 47, 58, 187
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 78, 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 48, 188
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 233
SetI ASST 3 cut(s) 82, 216, 225
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 169
SsiI CCGC 5 cut(s) 73, 139, 163, 199, 201
SspMI CTAG 2 cut(s) 21, 276
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 20, 275
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 103, 128
TasI AATT 1 cut(s) 169
TatI WGTACW 3 cut(s) 46, 57, 186
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 169
XmaJI CCTAGG 2 cut(s) 20, 275
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 2 cut(s) 21, 276
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.