Rroxscaffold_3G00246680

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003139
Physical Location & Seq
Reverse (-)
39875175 .. 39879986
4812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246680.1

Sequence Viewer

Length: 300 bp
ATGGGAGCCTCCAGTGGGCCAAGGCTTTCTGGAATGCAGAGACAAGTACTTAGTCTATACAGAGGGTTCTTGCGGGCAACTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCAAATGAGTTCCGCCACAATGCCAAGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGCGGAAGGAAACAGCTTGATCAGTTCAACAGCCCTGATACTGTTGGATTATCAGCTCTGAATGTGAGTCGTTTCCCACAAACAAAACATCCTACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

99

Amino Acids

11.45

Weight (kDa)

10.72

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 74 5.2e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 73, 139, 163, 199, 201
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 48, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 214, 254
AluI AGCT 2 cut(s) 214, 254
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 17
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmcAI AGTACT 2 cut(s) 48, 188
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 20, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 20, 199
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 5 cut(s) 73, 139, 163, 199, 201
BspANI GGCC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 20, 199
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 100, 217
BstUI CGCG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 17
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 47, 187
CviJI RGCY 6 cut(s) 8, 19, 25, 214, 231, 254
CviKI_1 RGCY 6 cut(s) 8, 19, 25, 214, 231, 254
CviQI GTAC 2 cut(s) 47, 187
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 1 cut(s) 58
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 19
HinfI GANTC 2 cut(s) 116, 265
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 15, 25, 246
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MluCI AATT 1 cut(s) 169
MlyI GAGTC 2 cut(s) 125, 274
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 19, 56
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 39
MvnI CGCG 1 cut(s) 201
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 2 cut(s) 124, 273
PpsI GAGTC 2 cut(s) 124, 273
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 2 cut(s) 48, 188
RsaNI GTAC 2 cut(s) 47, 187
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 48, 188
SchI GAGTC 2 cut(s) 125, 274
SetI ASST 2 cut(s) 216, 256
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
Sse9I AATT 1 cut(s) 169
SsiI CCGC 5 cut(s) 73, 139, 163, 199, 201
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 46, 186
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.