Prupe.8G008400_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003139
Physical Location & Seq
Forward (+)
639198 .. 640367
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G008400.1

Sequence Viewer

Length: 297 bp
ATGGGACTCTCCCGTGGACCAAGGCTTTCTGGGATGCAGAAACAAGTCCTTAGTCTATACAGACCGTTTCTGAGGGCAGCCCGTGCAAAATCTGCTGAAGATCGACAGCGGATTGAGTCACTTGTGTCAAGTGAGTTCCGCCGCAATGCCAAGGAGGTAGACCGCAAAAATTTTCTTTACATTGAGTACTTGCTTCGCCGCGCTAAGAAACAGCTTGATCAGCTCAGGAGCCCCGATGTTGTTGGATTATCAGCCCTGAATGTCAGTTTCTCGCAGACAAAACATCCCACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

99

Amino Acids

11.32

Weight (kDa)

10.94

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 109, 139, 142, 163, 199
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 188
AluBI AGCT 2 cut(s) 214, 223
AluI AGCT 2 cut(s) 214, 223
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 217
BisI GCNGC 3 cut(s) 78, 142, 199
BlsI GCNGC 3 cut(s) 79, 143, 200
BmcAI AGTACT 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 13, 20, 150
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 13, 20, 150
BseGI GGATG 2 cut(s) 39, 283
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 62, 238
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 5 cut(s) 109, 139, 142, 163, 199
BspCNI CTCAG 2 cut(s) 63, 237
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 13, 20, 150
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 2 cut(s) 20, 150
Bst4CI ACNGT 1 cut(s) 66
BstAPI GCANNNNNTGC 2 cut(s) 83, 92
BstDEI CTNAG 4 cut(s) 50, 71, 204, 224
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 39, 283
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 103, 220
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 3 cut(s) 83, 92, 220
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 39, 283
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 6 cut(s) 25, 80, 214, 223, 231, 254
CviKI_1 RGCY 6 cut(s) 25, 80, 214, 223, 231, 254
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 4 cut(s) 50, 71, 204, 224
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 20, 150
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 20, 150
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 20, 150
FaiI YATR 1 cut(s) 58
FaqI GGGAC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 78, 142, 199
FokI GGATG 2 cut(s) 46, 270
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 78, 142, 199
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 78, 142, 199
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 6, 116
Hpy166II GTNNAC 2 cut(s) 17, 160
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 17, 160
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 37, 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 92, 220
HpyF3I CTNAG 4 cut(s) 50, 71, 204, 224
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 15, 211, 269
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 2 cut(s) 169, 292
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 66, 148
MspA1I CMGCKG 1 cut(s) 109
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 83, 92, 220
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 117
PkrI GCNGC 3 cut(s) 79, 143, 200
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 78, 142, 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 233
SetI ASST 3 cut(s) 159, 216, 225
SfaNI GCATC 1 cut(s) 24
SinI GGWCC 1 cut(s) 17
Sse9I AATT 2 cut(s) 169, 292
SsiI CCGC 5 cut(s) 109, 139, 142, 163, 199
StyI CCWWGG 2 cut(s) 20, 150
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 169, 292
TatI WGTACW 1 cut(s) 186
TauI GCSGC 2 cut(s) 144, 201
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.