Rorug07G0135300

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003139
Physical Location & Seq
Forward (+)
10603095 .. 10603505
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0135300.1

Sequence Viewer

Length: 411 bp
ATGGAGTTCCTTGGAAGGAGACTTTCCGCCATGGGTGTCCCAGAAGATAATCAGCGGGCTATCATTGTAGATATACTTGAGGTGCTTGAAGTGGCCGTTCCCAAGCTTCCTATTCTTGTGAACATTATCGAGGTAGACCATAGCGTACGTAATTGGGTCAAATTTATTCCTGCAACTAAATCATCATTAGAGAGCTTGGAGAAAGTGCGACTTGATAGTTTAGAACTAGAAGCTATTTCATCGACTTGTGTTATTTGTATGGAGGGCCTTGCAGAAGGCGGTGTTGATCAACTGATTCATCGCTTGCCTTGCTCACACCTTTACCATGGAGCTTGCATTGTCGACTGGCTAGAAACGAGTCACTTGTGTCCCTTGTGTCGATATCAATTACCACCAAAACCCTCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

136

Amino Acids

15.2

Weight (kDa)

5.29

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 81 - 127 2.3e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 82 - 127 2.7e-12 Ring finger domain
zf-C3HC4_2 PF13923 83 - 126 3.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 83 - 113 8.7e-07 RING-like zinc finger
zf-C3HC4 PF00097 83 - 126 8.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 342
AciI CCGC 3 cut(s) 27, 55, 279
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 147
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 4 cut(s) 106, 195, 233, 332
AluI AGCT 4 cut(s) 106, 195, 233, 332
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 2 cut(s) 93, 265
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 80
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 227, 350
BmgT120I GGNCC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 10, 30, 325
Bse1I ACTGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 10, 30, 325
BseNI ACTGG 1 cut(s) 350
BshFI GGCC 2 cut(s) 95, 267
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 23, 354
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 23, 354
BsnI GGCC 2 cut(s) 95, 267
Bsp143I GATC 1 cut(s) 286
Bsp19I CCATGG 2 cut(s) 30, 325
BspACI CCGC 3 cut(s) 27, 55, 279
BspANI GGCC 2 cut(s) 95, 267
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 10, 30, 325
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 3 cut(s) 10, 30, 325
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 57, 305, 334
BstDSI CCRYGG 2 cut(s) 30, 325
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstSNI TACGTA 1 cut(s) 149
BsuRI GGCC 2 cut(s) 95, 267
BtgI CCRYGG 2 cut(s) 30, 325
BtgZI GCGATG 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 57, 305, 334
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 31, 326, 406
CviJI RGCY 8 cut(s) 59, 95, 106, 195, 233, 267, 332, 349
CviKI_1 RGCY 8 cut(s) 59, 95, 106, 195, 233, 267, 332, 349
CviQI GTAC 1 cut(s) 146
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 93
EciI GGCGGA 1 cut(s) 16
Eco105I TACGTA 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 10, 30, 325
Eco32I GATATC 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 265
EcoRV GATATC 1 cut(s) 383
EcoT14I CCWWGG 3 cut(s) 10, 30, 325
ErhI CCWWGG 3 cut(s) 10, 30, 325
FaeI CATG 3 cut(s) 34, 329, 409
FaiI YATR 6 cut(s) 32, 74, 141, 260, 327, 407
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 2 cut(s) 23, 354
FatI CATG 3 cut(s) 30, 325, 405
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 2 cut(s) 135, 342
FspBI CTAG 2 cut(s) 227, 350
HaeIII GGCC 2 cut(s) 95, 267
Hin1II CATG 3 cut(s) 34, 329, 409
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 295, 358
Hpy166II GTNNAC 3 cut(s) 121, 136, 343
Hpy8I GTNNAC 3 cut(s) 121, 136, 343
HpyAV CCTTC 2 cut(s) 9, 269
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 173, 272, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 34, 329, 409
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 3 cut(s) 54, 183, 331
MaeI CTAG 2 cut(s) 227, 350
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 56
MluCI AATT 3 cut(s) 151, 161, 386
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 3 cut(s) 73, 124, 256
MspA1I CMGCKG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 309
NcoI CCATGG 2 cut(s) 30, 325
NdeII GATC 1 cut(s) 286
NlaIII CATG 3 cut(s) 34, 329, 409
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 295
Pfl23II CGTACG 1 cut(s) 145
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 149
PspLI CGTACG 1 cut(s) 145
PspPI GGNCC 1 cut(s) 265
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SalI GTCGAC 1 cut(s) 341
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 367
SetI ASST 8 cut(s) 84, 108, 135, 151, 197, 235, 321, 334
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 149
Sse9I AATT 3 cut(s) 151, 161, 386
SsiI CCGC 3 cut(s) 27, 55, 279
SspMI CTAG 2 cut(s) 227, 350
StyI CCWWGG 3 cut(s) 10, 30, 325
TaiI ACGT 1 cut(s) 151
TaqI TCGA 4 cut(s) 129, 242, 342, 379
TasI AATT 3 cut(s) 151, 161, 386
TfiI GAWTC 1 cut(s) 295
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 228, 287
XapI RAATTY 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 135, 342
XspI CTAG 2 cut(s) 227, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.