Rroxscaffold_3G00246640

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003139
Physical Location & Seq
Reverse (-)
39826238 .. 39832762
6525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246640.1

Sequence Viewer

Length: 498 bp
ATGGGAGCCTCCAGTGGGCCAAGGCTTTCTGGAATGCAGAGACAAGTACTTAGTCTATACAGAGGGTTCTTGCGGGCAGCTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCGAATGAGTTCCGCCACAATGCCAAGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGCGGAAGGAAACAGCTTGATCAGCTCAAGAGCCCTGATACTGTTGGATTATCAGCTCTAAATGTGAGTCACAACAAAGGTATATTGAGTGACTTGATACGAACTGATACAGAAAGCCTGAATACTATAGATACTACAGATATAAAAGATTGTGTACTTTTCGAAACTCTCTTCATCATTGAGTCCGGTGCGGAACATAAGAAGACAGTGAAATGGGAGCCTCCAGTGGGCCAAGGCTTTCCGGAATGCAGAGACAAGTACTTAGTCTATACAGAGGGTTCTTGCGGGCAGCTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

8.99

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 74 9.4e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 7 cut(s) 73, 139, 163, 199, 201, 389, 483
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 4 cut(s) 48, 188, 354, 458
AfiI CCNNNNNNNGG 2 cut(s) 15, 425
AluBI AGCT 5 cut(s) 80, 214, 223, 254, 490
AluI AGCT 5 cut(s) 80, 214, 223, 254, 490
Alw26I GTCTC 2 cut(s) 34, 444
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 17, 427
ApeKI GCWGC 2 cut(s) 77, 487
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 17, 427
AsuII TTCGAA 1 cut(s) 360
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 34, 444
BfmI CTRYAG 2 cut(s) 324, 333
BisI GCNGC 3 cut(s) 78, 199, 488
BlsI GCNGC 3 cut(s) 79, 200, 489
BmcAI AGTACT 3 cut(s) 48, 188, 458
BmgT120I GGNCC 2 cut(s) 17, 427
BmiI GGNNCC 2 cut(s) 7, 417
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 20, 199, 430
BsaWI WCCGGW 2 cut(s) 383, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 425
Bse1I ACTGG 2 cut(s) 12, 422
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 20, 199, 430
BseLI CCNNNNNNNGG 2 cut(s) 15, 425
BseNI ACTGG 2 cut(s) 12, 422
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 19, 429
BsiSI CCGG 2 cut(s) 384, 440
BslI CCNNNNNNNGG 2 cut(s) 15, 425
BsmAI GTCTC 2 cut(s) 34, 444
BsmI GAATGC 2 cut(s) 39, 449
BsnI GGCC 2 cut(s) 19, 429
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 7 cut(s) 73, 139, 163, 199, 201, 389, 483
BspANI GGCC 2 cut(s) 19, 429
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 7, 417
BspT104I TTCGAA 1 cut(s) 360
BsrI ACTGG 2 cut(s) 12, 422
BssECI CCNNGG 3 cut(s) 20, 199, 430
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 2 cut(s) 20, 430
Bst4CI ACNGT 2 cut(s) 241, 406
Bst6I CTCTTC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 75, 485
BstDEI CTNAG 2 cut(s) 50, 460
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 2 cut(s) 34, 444
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 324, 333
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 19, 429
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 3 cut(s) 19, 411, 429
Cac8I GCNNGC 2 cut(s) 75, 485
Cfr13I GGNCC 2 cut(s) 17, 427
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 4 cut(s) 47, 187, 353, 457
CviQI GTAC 4 cut(s) 47, 187, 353, 457
DdeI CTNAG 2 cut(s) 50, 460
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 20, 430
Eco24I GRGCYC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 20, 430
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 20, 430
FaiI YATR 6 cut(s) 58, 281, 326, 341, 396, 468
FauI CCCGC 2 cut(s) 66, 476
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 78, 199, 488
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 78, 199, 488
GluI GCNGC 3 cut(s) 78, 199, 488
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 19, 429
HapII CCGG 2 cut(s) 384, 440
HinfI GANTC 3 cut(s) 116, 265, 380
HpaII CCGG 2 cut(s) 384, 440
Hpy166II GTNNAC 2 cut(s) 160, 353
Hpy188III TCNNGA 3 cut(s) 30, 226, 440
Hpy8I GTNNAC 2 cut(s) 160, 353
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 241, 406
HpyCH4V TGCA 2 cut(s) 37, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 50, 460
Kpn2I TCCGGA 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 2 cut(s) 5, 415
LpnPI CCDG 7 cut(s) 15, 25, 246, 329, 397, 435, 453
Lsp1109I GCAGC 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 117, 266, 287
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 3 cut(s) 110, 361, 412
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 169
MlyI GAGTC 3 cut(s) 125, 274, 389
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 4 cut(s) 19, 56, 429, 466
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 2 cut(s) 86, 496
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 2 cut(s) 384, 440
Mva1269I GAATGC 2 cut(s) 39, 449
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 2 cut(s) 7, 417
NmuCI GTSAC 3 cut(s) 117, 266, 287
NspV TTCGAA 1 cut(s) 360
PctI GAATGC 2 cut(s) 39, 449
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 79, 200, 489
PleI GAGTC 3 cut(s) 124, 273, 388
PpsI GAGTC 3 cut(s) 124, 273, 388
PspN4I GGNNCC 2 cut(s) 7, 417
PspPI GGNCC 2 cut(s) 17, 427
RsaI GTAC 4 cut(s) 48, 188, 354, 458
RsaNI GTAC 4 cut(s) 47, 187, 353, 457
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 86, 496
SatI GCNGC 3 cut(s) 78, 199, 488
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 2 cut(s) 17, 427
ScaI AGTACT 3 cut(s) 48, 188, 458
SchI GAGTC 3 cut(s) 125, 274, 389
SduI GDGCHC 1 cut(s) 233
SetI ASST 6 cut(s) 82, 216, 225, 256, 280, 492
SfcI CTRYAG 2 cut(s) 324, 333
Sfr303I CCGCGG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 169
SsiI CCGC 7 cut(s) 73, 139, 163, 199, 201, 389, 483
StyI CCWWGG 2 cut(s) 20, 430
TaaI ACNGT 2 cut(s) 241, 406
TaqI TCGA 3 cut(s) 103, 128, 360
TasI AATT 1 cut(s) 169
TatI WGTACW 4 cut(s) 46, 186, 352, 456
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 86, 496
Tru9I TTAA 2 cut(s) 86, 496
TscAI CASTG 3 cut(s) 19, 411, 429
TseFI GTSAC 3 cut(s) 117, 266, 287
TseI GCWGC 2 cut(s) 77, 487
Tsp45I GTSAC 3 cut(s) 117, 266, 287
TspDTI ATGAA 1 cut(s) 361
TspRI CASTG 3 cut(s) 19, 411, 429
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 134
ZrmI AGTACT 3 cut(s) 48, 188, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.