RchiOBHm_Chr6g0251481

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003139
Physical Location & Seq
Forward (+)
6718397 .. 6718681
285 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22545

Sequence Viewer

Length: 285 bp
ATGGGAGCCTCCAGTGGGTCGAGGCTTTCTGGGATGCAAAAACAAGTACTTGGTCTATATAGAGGGTTCTTACGGGCAGCTCGTTCAAAATCTCCAGAAGACCGACACAAAATTGAATCATTTATATCAGATGAGTTCCGCAGCAATGCTAAGCAAGTAGACCGCAAAAATTTCCTTTACATTGAGTACTTACTTCTTCGGGGGAAGAAACAGCATGATCAGCTCAAGAGCCGGAATACTGTTGGATTATTAGCCGTCAACATCAGTGTTTTCCAAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

10.38

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 73 5e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 2 cut(s) 139, 163
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 2 cut(s) 48, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 2 cut(s) 87, 116
AluBI AGCT 2 cut(s) 80, 223
AluI AGCT 2 cut(s) 80, 223
ApeKI GCWGC 2 cut(s) 77, 141
ApoI RAATTY 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 89, 153
BceAI ACGGC 1 cut(s) 239
BclI TGATCA 1 cut(s) 217
BisI GCNGC 2 cut(s) 78, 142
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 2 cut(s) 79, 143
BmcAI AGTACT 2 cut(s) 48, 188
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 151
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 89, 153
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 15
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 139, 163
BspLI GGNNCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 89, 153
BstV2I GAAGAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 19, 271
Csp6I GTAC 2 cut(s) 47, 187
CviAII CATG 1 cut(s) 215
CviJI RGCY 6 cut(s) 8, 25, 80, 223, 231, 254
CviKI_1 RGCY 6 cut(s) 8, 25, 80, 223, 231, 254
CviQI GTAC 2 cut(s) 47, 187
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
FaeI CATG 1 cut(s) 218
FaiI YATR 4 cut(s) 58, 60, 125, 216
FatI CATG 1 cut(s) 214
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 78, 142
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 78, 142
GluI GCNGC 2 cut(s) 78, 142
GsuI CTGGAG 1 cut(s) 78
HapII CCGG 1 cut(s) 232
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 160, 259
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 95, 226
Hpy8I GTNNAC 2 cut(s) 160, 259
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 15, 25, 108, 245
Lsp1109I GCAGC 2 cut(s) 89, 153
LweI GCATC 1 cut(s) 24
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 110, 188, 217
MluCI AATT 3 cut(s) 111, 169, 280
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 15, 19, 56
MseI TTAA 1 cut(s) 283
MspI CCGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 79, 143
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 2 cut(s) 48, 188
RsaNI GTAC 2 cut(s) 47, 187
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 2 cut(s) 78, 142
Sau3AI GATC 1 cut(s) 217
ScaI AGTACT 2 cut(s) 48, 188
SetI ASST 2 cut(s) 82, 225
SfaNI GCATC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 3 cut(s) 111, 169, 280
SsiI CCGC 2 cut(s) 139, 163
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 20
TaqII GACCGA 1 cut(s) 117
TasI AATT 3 cut(s) 111, 169, 280
TatI WGTACW 2 cut(s) 46, 186
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 2 cut(s) 19, 271
TseI GCWGC 2 cut(s) 77, 141
TspRI CASTG 2 cut(s) 19, 271
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.