AT2G39805

Integral membrane Yip1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009035
Physical Location & Seq
Reverse (-)
16609797 .. 16612554
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39805.2

Sequence Viewer

Length: 828 bp
ATGGATGAGTCGTTCGCTAATCTACAATCAAGCCATTTGCTTGGTTCAGTTCCGGCTGTGATCAGCGACGACAAGAGAAGCACAAATGTACCAATAGCAAGCGTCAATGAAGGCCCTTCTGCAAGCATGCAAATATTTCCACCGAATCTAGGAAACAATACAAAGGGTTATCAAACTCTTGAGAGCCCAACAGAAGGACCAGCACAACAGCCATCAAACAACTGGAAGGGCTTTTTTAATGTCTACTCATATACCCAATACTTCGACGTGGACACGGACGTTGTTTTGAACAGATTAATGAGCTCTTTATATCCTACTAGTGGAGATTTTTTCAACAAGATTGATGCAAACCCTGATTTGTATGGACTTGTCTGGATCTGCACTACGCTTGTGTTTGTGCTTGCTTCTCTCGGAAATTGTGCTACATATCTCGTGAAGAAACGAACCGACAGTAATGCTCCTTGGATCTTTGATGTGAACTATATGAATTTGGCAGCATCTATAATATATGGATATGCAATAATTGTGCCTCTGGGATTTTATTTTGCACTCCGTTATATGGGGTCCAAAGCTGATCTTCTAAGATTCTGGTGCCTTTGGGGATACTCTCTCTTCATTTTCGTTCCAACCTCTCTTCCATTGCTTATTCCAGTAGAGTTTCTGAGATGGGTGATTATACTCTTAGCTGGTAGTGCATCATCGTGTTTTGTTGCCCTGAATCTACGGTCTTACCTCGAGACGAACAATGATATCACGGTTGTAATGGCTGCAGCATTTGGTCTGCAAATGGTTCTTTCAATCTTCATCAAGGTCTGGTTCTTTCCTTAA

Protein Analysis

275

Amino Acids

30.71

Weight (kDa)

4.92

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 108 - 268 1.5e-15 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 591
AccI GTMKAC 1 cut(s) 243
AclWI GGATC 2 cut(s) 383, 473
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 4 cut(s) 149, 194, 320, 559
AgsI TTSAA 3 cut(s) 289, 334, 798
AhlI ACTAGT 1 cut(s) 317
AjiI CACGTC 1 cut(s) 268
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 303, 572, 686
AluI AGCT 3 cut(s) 303, 572, 686
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 2 cut(s) 383, 473
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 3 cut(s) 494, 767, 770
ApoI RAATTY 1 cut(s) 487
AseI ATTAAT 1 cut(s) 296
AspS9I GGNCC 3 cut(s) 113, 197, 564
AsuHPI GGTGA 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 2 cut(s) 197, 564
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 2 cut(s) 188, 305
BauI CACGAG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 506, 754, 782
BccI CCATC 2 cut(s) 220, 660
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 731
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 2 cut(s) 149, 318
BfmI CTRYAG 1 cut(s) 768
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 3 cut(s) 495, 768, 771
BlsI GCNGC 3 cut(s) 496, 769, 772
Bme18I GGWCC 2 cut(s) 197, 564
BmeT110I CYCGRG 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 113, 197, 564
BmiI GGNNCC 2 cut(s) 565, 593
BmsI GCATC 3 cut(s) 334, 506, 704
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 461
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 194, 320, 559
Bse1I ACTGG 2 cut(s) 227, 650
Bse3DI GCAATG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 149, 194, 320, 559
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 2 cut(s) 227, 650
BseXI GCAGC 3 cut(s) 506, 754, 782
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 4 cut(s) 149, 194, 320, 559
BsmAI GTCTC 1 cut(s) 731
BsmBI CGTCTC 1 cut(s) 731
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 2 cut(s) 188, 305
Bsp143I GATC 4 cut(s) 60, 375, 465, 574
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 565, 593
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 2 cut(s) 383, 473
BspT107I GGYRCC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 2 cut(s) 227, 650
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 4 cut(s) 60, 375, 465, 574
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 452, 726, 757
Bst6I CTCTTC 2 cut(s) 617, 639
BstC8I GCNNGC 4 cut(s) 100, 124, 128, 402
BstDEI CTNAG 3 cut(s) 581, 662, 682
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 63, 378, 468, 577
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 4 cut(s) 60, 375, 465, 574
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 506, 754, 782
BstX2I RGATCY 2 cut(s) 375, 465
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 2 cut(s) 375, 465
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 1 cut(s) 114
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 100, 124, 128, 402
Cfr13I GGNCC 3 cut(s) 113, 197, 564
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 127
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 3 cut(s) 581, 662, 682
DpnI GATC 4 cut(s) 62, 377, 467, 576
DpnII GATC 4 cut(s) 60, 375, 465, 574
Eam1104I CTCTTC 2 cut(s) 617, 639
EarI CTCTTC 2 cut(s) 617, 639
Ecl136II GAGCTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 461
Eco24I GRGCYC 2 cut(s) 188, 305
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 2 cut(s) 197, 564
Eco53kI GAGCTC 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 113
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 461
EcoT38I GRGCYC 2 cut(s) 188, 305
ErhI CCWWGG 1 cut(s) 461
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 1 cut(s) 130
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FatI CATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 495, 768, 771
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 188, 305
Fsp4HI GCNGC 3 cut(s) 495, 768, 771
FspBI CTAG 2 cut(s) 149, 318
GluI GCNGC 3 cut(s) 495, 768, 771
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 130
HinfI GANTC 4 cut(s) 8, 145, 585, 718
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 682
Hpy166II GTNNAC 3 cut(s) 244, 271, 478
Hpy188I TCNGA 2 cut(s) 413, 663
Hpy188III TCNNGA 4 cut(s) 179, 373, 433, 736
Hpy8I GTNNAC 3 cut(s) 244, 271, 478
Hpy99I CGWCG 2 cut(s) 71, 269
HpyAV CCTTC 4 cut(s) 104, 126, 188, 220
HpyCH4III ACNGT 3 cut(s) 452, 726, 757
HpyCH4IV ACGT 2 cut(s) 267, 279
HpyCH4V TGCA 9 cut(s) 122, 130, 347, 381, 518, 548, 695, 770, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 3 cut(s) 581, 662, 682
HpySE526I ACGT 2 cut(s) 267, 279
Hsp92II CATG 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 4 cut(s) 60, 375, 465, 574
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 3 cut(s) 506, 754, 782
LweI GCATC 3 cut(s) 334, 506, 704
MaeI CTAG 2 cut(s) 149, 318
MaeII ACGT 2 cut(s) 267, 279
MalI GATC 4 cut(s) 62, 377, 467, 576
MboI GATC 4 cut(s) 60, 375, 465, 574
MboII GAAGA 5 cut(s) 448, 569, 604, 626, 793
MflI RGATCY 2 cut(s) 375, 465
MhlI GDGCHC 2 cut(s) 188, 305
MluCI AATT 3 cut(s) 415, 487, 522
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 3 cut(s) 540, 640, 743
MseI TTAA 3 cut(s) 237, 296, 826
MslI CAYNNNNRTG 1 cut(s) 700
MspI CCGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 692
NdeII GATC 4 cut(s) 60, 375, 465, 574
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 565, 593
NspI RCATGY 1 cut(s) 130
PaeI GCATGC 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 734
PfeI GAWTC 3 cut(s) 145, 585, 718
PkrI GCNGC 3 cut(s) 496, 769, 772
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 565, 593
PspPI GGNCC 3 cut(s) 113, 197, 564
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 2 cut(s) 375, 465
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 700
SacI GAGCTC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 237, 296, 826
SatI GCNGC 3 cut(s) 495, 768, 771
Sau3AI GATC 4 cut(s) 60, 375, 465, 574
Sau96I GGNCC 3 cut(s) 113, 197, 564
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 2 cut(s) 188, 305
SetI ASST 8 cut(s) 270, 282, 305, 574, 632, 688, 735, 813
SfaNI GCATC 3 cut(s) 334, 506, 704
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 2 cut(s) 197, 564
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 700
SmlI CTYRAG 2 cut(s) 179, 734
SmoI CTYRAG 2 cut(s) 179, 734
SpeI ACTAGT 1 cut(s) 317
SphI GCATGC 1 cut(s) 130
Sse9I AATT 3 cut(s) 415, 487, 522
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 149, 318
SstI GAGCTC 1 cut(s) 305
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 452, 726, 757
TaiI ACGT 2 cut(s) 270, 282
TaqI TCGA 2 cut(s) 264, 735
TasI AATT 3 cut(s) 415, 487, 522
TfiI GAWTC 3 cut(s) 145, 585, 718
Tru1I TTAA 3 cut(s) 237, 296, 826
Tru9I TTAA 3 cut(s) 237, 296, 826
TseI GCWGC 3 cut(s) 494, 767, 770
TspDTI ATGAA 4 cut(s) 123, 500, 604, 793
TspGWI ACGGA 2 cut(s) 290, 542
VpaK11BI GGWCC 2 cut(s) 197, 564
VspI ATTAAT 1 cut(s) 296
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 149, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.