Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

24964175 .. 24968022

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1140300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACGAGTCCTACGCTGGCCTCCCCACCAGCCACTTGCTCGGCTCCGTCCCTGCTGTTACTGAAGATAAAGAAAAGGGTACCACAAGTTATGAAGCACCTGAAGCGAATTTGCAAATCTTCCCCCCAAATAATAATCGAGGAGAGAAAGGGGGCGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAGCAACAACCAGCCAACAACTGGAGGGGAGTATTTAATATCGCATCATACACACAATATTTCAATGTGGATACAGACGTTGTCTTAAACAGAATGCTTAGTTCTCTATATCCCCATACTGGAGATTTTTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAGTCTGGATTTCCACTACGTTAGTGTTTGTGCTTGCTGCACTTGGAAACTGTGCCACCTACCTCATGGACAAGCGCACTGATAGCAGTACTGCTTGGGATTTTAATGTCAGTTATATGAATATGGCAGCCTTTTCAGTCTACGGTTATGCAATTTTGGTGCCATTGGCATTCTATTTCTTGATACAGTATATGGGCACCTCAAATGCCAGCCTAGTTCGCTTTTGGTGTATGTGGGGATACTCTCTCTTCATTTTCATTGCAGCCTCTTTTCTGTTGCTTATCCCAGTTGAGGCTCTTCGGTGGATCTTTATACTTCTCGTTGGCGGGTACTCTGCTTGCTTTGTTGCCTTTAATCTCAGGTCCAATATGGAGGGGAATGAACTTTCAATTGTGGTGATCGCTGCATTTCTCTTGCAACTGGGTCTGGCAATCTTCTTTAAGGTCTACTTCTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

273

Amino Acids

30.39

Weight (kDa)

4.67

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	100 - 265	4.5e-15	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	3 cut(s)	80, 517, 554
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	2 cut(s)	498, 804
AciI	CCGC	2 cut(s)	156, 684
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	84, 123
AfaI	GTAC	4 cut(s)	82, 178, 448, 689
AfiI	CCNNNNNNNGG	3 cut(s)	213, 311, 649
AgsI	TTSAA	2 cut(s)	256, 747
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	395, 485, 620, 761
ApoI	RAATTY	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	766
AvaII	GGWCC	1 cut(s)	720
BaeGI	GKGCMC	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	3 cut(s)	80, 517, 554
BbvI	GCAGC	4 cut(s)	382, 497, 632, 748
BciVI	GTATCC	2 cut(s)	256, 590
BfaI	CTAG	2 cut(s)	359, 572
BfuI	GTATCC	2 cut(s)	256, 590
BisI	GCNGC	4 cut(s)	396, 486, 621, 762
BlsI	GCNGC	4 cut(s)	397, 487, 622, 763
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	4 cut(s)	46, 82, 519, 556
BmrI	ACTGGG	2 cut(s)	638, 788
BmsI	GCATC	2 cut(s)	245, 325
BmuI	ACTGGG	2 cut(s)	638, 788
BpmI	CTGGAG	2 cut(s)	235, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 311, 649
Bse1I	ACTGG	4 cut(s)	218, 316, 644, 783
Bse3DI	GCAATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	213, 311, 649
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	730
BseNI	ACTGG	4 cut(s)	218, 316, 644, 783
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	4 cut(s)	382, 497, 632, 748
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	3 cut(s)	80, 517, 554
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	213, 311, 649
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	2 cut(s)	291, 527
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	346, 663, 756
BspACI	CCGC	2 cut(s)	156, 684
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	729
BspLI	GGNNCC	4 cut(s)	46, 82, 519, 556
BspPI	GGATC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	3 cut(s)	80, 517, 554
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	4 cut(s)	218, 316, 644, 783
BssMI	GATC	3 cut(s)	346, 663, 756
Bst4CI	ACNGT	4 cut(s)	169, 410, 503, 546
Bst6I	CTCTTC	2 cut(s)	611, 660
BstC8I	GCNNGC	4 cut(s)	19, 393, 568, 697
BstDEI	CTNAG	2 cut(s)	290, 716
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	349, 666, 759
BstMBI	GATC	3 cut(s)	346, 663, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 441, 576
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	4 cut(s)	382, 497, 632, 748
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuI	GTATCC	2 cut(s)	256, 590
BsuRI	GGCC	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	4 cut(s)	19, 393, 568, 697
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	720
Csp6I	GTAC	4 cut(s)	81, 177, 447, 688
CviAII	CATG	2 cut(s)	424, 816
CviJI	RGCY	9 cut(s)	21, 33, 45, 206, 358, 488, 570, 623, 653
CviKI_1	RGCY	9 cut(s)	21, 33, 45, 206, 358, 488, 570, 623, 653
CviQI	GTAC	4 cut(s)	81, 177, 447, 688
DdeI	CTNAG	2 cut(s)	290, 716
DpnI	GATC	3 cut(s)	348, 665, 758
DpnII	GATC	3 cut(s)	346, 663, 756
Eam1104I	CTCTTC	2 cut(s)	611, 660
EarI	CTCTTC	2 cut(s)	611, 660
Eco47I	GGWCC	1 cut(s)	720
Eco57I	CTGAAG	2 cut(s)	84, 123
FaeI	CATG	2 cut(s)	427, 819
FalI	AAGNNNNNCTT	1 cut(s)	791
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	423, 815
FauI	CCCGC	1 cut(s)	677
FblI	GTMKAC	2 cut(s)	498, 804
Fnu4HI	GCNGC	4 cut(s)	396, 486, 621, 762
Fsp4HI	GCNGC	4 cut(s)	396, 486, 621, 762
FspBI	CTAG	2 cut(s)	359, 572
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	4 cut(s)	396, 486, 621, 762
GsuI	CTGGAG	2 cut(s)	235, 333
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	427, 819
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	2 cut(s)	499, 805
Hpy188III	TCNNGA	2 cut(s)	364, 538
Hpy8I	GTNNAC	2 cut(s)	499, 805
HpyCH4III	ACNGT	4 cut(s)	169, 410, 503, 546
HpyCH4IV	ACGT	2 cut(s)	270, 377
HpyCH4V	TGCA	6 cut(s)	115, 398, 509, 620, 764, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 441, 576
HpyF3I	CTNAG	2 cut(s)	290, 716
HpySE526I	ACGT	2 cut(s)	270, 377
Hsp92II	CATG	2 cut(s)	427, 819
HspAI	GCGC	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	346, 663, 756
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	4 cut(s)	382, 497, 632, 748
LweI	GCATC	2 cut(s)	245, 325
MaeI	CTAG	2 cut(s)	359, 572
MaeII	ACGT	2 cut(s)	270, 377
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	348, 665, 758
MboI	GATC	3 cut(s)	346, 663, 756
MboII	GAAGA	5 cut(s)	77, 112, 598, 647, 784
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	4 cut(s)	109, 330, 510, 747
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	32, 134, 210, 431, 568, 634, 643, 724
MseI	TTAA	5 cut(s)	228, 278, 462, 711, 798
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	291, 527
MwoI	GCNNNNNNNGC	3 cut(s)	104, 441, 576
NdeII	GATC	3 cut(s)	346, 663, 756
NlaIII	CATG	2 cut(s)	427, 819
NlaIV	GGNNCC	4 cut(s)	46, 82, 519, 556
NmeAIII	GCCGAG	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	2 cut(s)	291, 527
PflFI	GACNNNGTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	397, 487, 622, 763
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	4 cut(s)	46, 82, 519, 556
PspPI	GGNCC	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	4 cut(s)	82, 178, 448, 689
RsaNI	GTAC	4 cut(s)	81, 177, 447, 688
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	5 cut(s)	228, 278, 462, 711, 798
SatI	GCNGC	4 cut(s)	396, 486, 621, 762
Sau3AI	GATC	3 cut(s)	346, 663, 756
Sau96I	GGNCC	1 cut(s)	720
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	8 cut(s)	103, 273, 380, 419, 423, 560, 722, 804
SfaNI	GCATC	2 cut(s)	245, 325
SinI	GGWCC	1 cut(s)	720
Sse9I	AATT	4 cut(s)	109, 330, 510, 747
SsiI	CCGC	2 cut(s)	156, 684
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	2 cut(s)	359, 572
TaaI	ACNGT	4 cut(s)	169, 410, 503, 546
TaiI	ACGT	2 cut(s)	273, 380
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	109, 330, 510, 747
TatI	WGTACW	2 cut(s)	176, 446
Tru1I	TTAA	5 cut(s)	228, 278, 462, 711, 798
Tru9I	TTAA	5 cut(s)	228, 278, 462, 711, 798
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	4 cut(s)	395, 485, 620, 761
TspDTI	ATGAA	5 cut(s)	108, 491, 598, 604, 753
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	442
Tth111I	GACNNNGTC	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	720
XapI	RAATTY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 421
XmiI	GTMKAC	2 cut(s)	498, 804
XspI	CTAG	2 cut(s)	359, 572
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.