Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

18282558 .. 18285921

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGACGAGTCCTACTCCGGCCTCCCCACCAGCCATTTACTCGGCTCAGTTCCGGCTGTTGTAAGTGAAGATAAAGACAAGAGTACCGCAAGCTATGAAGCACCTGAAGCGAATTTGCAAATCTTTCCCCCGAATAATGGAGGAGGCAAAGGGCGCGGTTATCAAACTGTGGGAGGTCCAAGTGAAACATTTGAAGAACAACCGGCAAACAACTGGAGGGGAGTATTTAATGTCGCATCATACACACAATATTTCAATGTGGATACGGACATTGTCCTGAACAGATTACTAAGTTCTTTGTTTCCCCACACTGGAGATTTCTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAGTATGGATCTCCACTACATTAGTGTTCATTCTGGCTGCACTTGGAAACTGTGCAACCTACCTAATGGACAAGCACAGTGATACCTCTACTGCTTGGGGCTTTAATGTCAGTTATATGAGTTTGGCAGCCTGTTCAGTCTATGGTTATGCAATTTTGGTCCCCTTGGCATTTTATTTTTTGCTACAGTATATGGGGGCAAATTCTAGCCTTATTCAACTCTGGTGTATGTGGGGATATTCTCTCTTCATCTTTGTTTTAGCATCTTTTGTGTTACTTATCCCAGTTGAGGCTCTTAGATGGATCATTATAGTTCTTGTCGGTGCTGCGTCTGCTTCCTTTGTTGCCTTGAACCTCAGGTCTCATATGGAGGGGAGTGATATTACAATAGTGGTGATCGCTGCATTTCTCTTGCAATTGGCTCTGGCAATCTTCTTTAAGGTTTACTTCTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

272

Amino Acids

29.77

Weight (kDa)

4.71

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	100 - 264	1.9e-15	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	87, 156
AclWI	GGATC	2 cut(s)	374, 668
AcsI	RAATTY	2 cut(s)	112, 559
AcuI	CTGAAG	2 cut(s)	126, 307
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
AgsI	TTSAA	4 cut(s)	194, 256, 575, 709
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	2 cut(s)	374, 668
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	395, 485, 683, 758
ApoI	RAATTY	2 cut(s)	112, 559
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	176, 517
AsuHPI	GGTGA	1 cut(s)	763
AvaII	GGWCC	2 cut(s)	176, 517
AxyI	CCTNAGG	1 cut(s)	713
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BbvI	GCAGC	4 cut(s)	382, 497, 670, 745
BccI	CCATC	1 cut(s)	651
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	359, 564
BfmI	CTRYAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	4 cut(s)	396, 486, 684, 759
BlsI	GCNGC	4 cut(s)	397, 487, 685, 760
Bme18I	GGWCC	2 cut(s)	176, 517
BmgT120I	GGNCC	2 cut(s)	176, 517
BmiI	GGNNCC	1 cut(s)	519
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	3 cut(s)	245, 325, 629
BmuI	ACTGGG	1 cut(s)	635
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	235, 333
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 311, 646
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	3 cut(s)	218, 316, 641
Bse21I	CCTNAGG	1 cut(s)	713
BseDI	CCNNGG	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
BseMII	CTCAG	2 cut(s)	60, 727
BseNI	ACTGG	3 cut(s)	218, 316, 641
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	382, 497, 670, 745
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	18, 53, 203
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	346, 366, 660, 753
BspACI	CCGC	2 cut(s)	87, 156
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	59, 726
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	374, 668
BspTNI	GGTCTC	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	218, 316, 641
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	346, 366, 660, 753
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	4 cut(s)	169, 410, 437, 546
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	4 cut(s)	46, 290, 653, 713
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	349, 369, 663, 756
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	346, 366, 660, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 153, 689
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	382, 497, 670, 745
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	309, 442
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	176, 517
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	813
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	46, 290, 653, 713
DpnI	GATC	4 cut(s)	348, 368, 662, 755
DpnII	GATC	4 cut(s)	346, 366, 660, 753
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	176, 517
Eco57I	CTGAAG	2 cut(s)	126, 307
Eco81I	CCTNAGG	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	1 cut(s)	816
FalI	AAGNNNNNCTT	1 cut(s)	788
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	1 cut(s)	812
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	4 cut(s)	396, 486, 684, 759
Fsp4HI	GCNGC	4 cut(s)	396, 486, 684, 759
FspBI	CTAG	2 cut(s)	359, 564
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	396, 486, 684, 759
GsuI	CTGGAG	2 cut(s)	235, 333
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	3 cut(s)	18, 53, 203
HgaI	GACGC	1 cut(s)	675
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	816
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	3 cut(s)	18, 53, 203
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	802
HpyCH4III	ACNGT	4 cut(s)	169, 410, 437, 546
HpyCH4V	TGCA	6 cut(s)	118, 398, 413, 509, 761, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 153, 689
HpyF3I	CTNAG	4 cut(s)	46, 290, 653, 713
Hsp92II	CATG	1 cut(s)	816
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	346, 366, 660, 753
Lsp1109I	GCAGC	4 cut(s)	382, 497, 670, 745
LweI	GCATC	3 cut(s)	245, 325, 629
MaeI	CTAG	2 cut(s)	359, 564
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	4 cut(s)	348, 368, 662, 755
MboI	GATC	4 cut(s)	346, 366, 660, 753
MboII	GAAGA	6 cut(s)	80, 206, 313, 595, 781, 799
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	5 cut(s)	112, 330, 510, 559, 773
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	9 cut(s)	32, 134, 137, 167, 210, 454, 640, 721, 722
MseI	TTAA	3 cut(s)	228, 462, 795
MspI	CCGG	3 cut(s)	18, 53, 203
MunI	CAATTG	1 cut(s)	773
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	107, 153, 689
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	4 cut(s)	346, 366, 660, 753
NlaIII	CATG	1 cut(s)	816
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	21
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	397, 487, 685, 760
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	176, 517
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	228, 462, 795
SatI	GCNGC	4 cut(s)	396, 486, 684, 759
Sau3AI	GATC	4 cut(s)	346, 366, 660, 753
Sau96I	GGNCC	2 cut(s)	176, 517
SchI	GAGTC	1 cut(s)	17
SetI	ASST	9 cut(s)	95, 106, 178, 419, 423, 446, 714, 719, 801
SfaNI	GCATC	3 cut(s)	245, 325, 629
SfcI	CTRYAG	1 cut(s)	542
SinI	GGWCC	2 cut(s)	176, 517
Sse9I	AATT	5 cut(s)	112, 330, 510, 559, 773
SsiI	CCGC	2 cut(s)	87, 156
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	2 cut(s)	359, 564
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	169, 410, 437, 546
TasI	AATT	5 cut(s)	112, 330, 510, 559, 773
Tru1I	TTAA	3 cut(s)	228, 462, 795
Tru9I	TTAA	3 cut(s)	228, 462, 795
TscAI	CASTG	2 cut(s)	316, 442
TseI	GCWGC	4 cut(s)	395, 485, 683, 758
TspDTI	ATGAA	3 cut(s)	111, 376, 595
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	316, 442
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	176, 517
XapI	RAATTY	2 cut(s)	112, 559
XspI	CTAG	2 cut(s)	359, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.