Rh1AG350300

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009035
Physical Location & Seq
Reverse (-)
58719893 .. 58723875
3983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG350300.1

Sequence Viewer

Length: 711 bp
ATGGACGAGTCCTACTCCGGCCTCCCCACCAGCCATTTACTCGGCTCAGTTCCCGCTGTTGTAGGTGAAGATAAAGACAAGAGTACCACAAGCTATGAAGCACCTGAAGCTAATTTGCAAATCTTCCCCCCAAATAGTGGAGGAGACAGAGGGCGCGGCGGTTATCAAACTGTTGGAGGTCCAAGTGAAACATTTGAAGAACAACCAGCAAACAACTGGAGGGGAGTATTTAATGTTGCATCATACACACAATATTTCAATGTGGATACGGACATTGTCTTGAACAGATTACTAAGTTCTTTGTTTCCCCACACTGGAGATTTTTTCAGCAAAATTGATGCCAATCCTGATCTATATGGGCTAATATGGATCTGCACTACATTAGTGTTCGTGCTGACTTCTCTTGGAAACTGTGCCACCTACCTAATGGACAAGCACACTGATACCACTACTTCTTGGGTCTTTAATGTCAGTTATATGAGTTTGGCAGCCTGTTCAGTCTATGGTTATGCAATTTTGGTCCCCTTGGCGTTTTATTTTTTGCTGCAGTATATGGGTGCAAAAACTAGCCTTGTTCGATTCTGGTGTATGTGGGGATACTCTCTCTTCATTTTTGTTGTAGCATCTGTAAGTACCTGCATCCCTGCTCTGCTGTCAGTCGTTTGTTCTTTTCCCCTTTTTTTCTCTCCATTTTGGAAGGCCAGAAGCTGA

Protein Analysis

236

Amino Acids

26.15

Weight (kDa)

4.9

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 101 - 223 1e-13 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 156
AciI CCGC 3 cut(s) 54, 156, 159
AclWI GGATC 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 85, 634
AfiI CCNNNNNNNGG 2 cut(s) 137, 314
AgsI TTSAA 3 cut(s) 197, 259, 283
AluBI AGCT 3 cut(s) 93, 110, 708
AluI AGCT 3 cut(s) 93, 110, 708
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 377
AlwNI CAGNNNCTG 1 cut(s) 708
AoxI GGCC 2 cut(s) 19, 699
ApeKI GCWGC 2 cut(s) 488, 544
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 179, 520
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 179, 520
BaeI ACNNNNGTAYC 2 cut(s) 67, 100
BbvI GCAGC 2 cut(s) 500, 531
BciVI GTATCC 2 cut(s) 259, 590
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 2 cut(s) 259, 590
BisI GCNGC 3 cut(s) 157, 489, 545
BlsI GCNGC 3 cut(s) 158, 490, 546
Bme18I GGWCC 2 cut(s) 179, 520
BmgT120I GGNCC 2 cut(s) 179, 520
BmiI GGNNCC 1 cut(s) 522
BmsI GCATC 4 cut(s) 248, 328, 632, 648
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 238, 336
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 314
Bse1I ACTGG 2 cut(s) 221, 319
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 1 cut(s) 639
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 137, 314
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 221, 319
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 500, 531
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 21, 701
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 137, 314
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 21, 701
Bsp143I GATC 2 cut(s) 349, 369
BspACI CCGC 3 cut(s) 54, 156, 159
BspANI GGCC 2 cut(s) 21, 701
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 549
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 377
BsrI ACTGG 2 cut(s) 221, 319
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 2 cut(s) 349, 369
BssT1I CCWWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 172, 413
Bst6I CTCTTC 1 cut(s) 611
BstDEI CTNAG 2 cut(s) 46, 293
BstF5I GGATG 1 cut(s) 639
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 352, 372
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 349, 369
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 545
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 500, 531
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 2 cut(s) 259, 590
BsuRI GGCC 2 cut(s) 21, 701
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 312, 438
BveI ACCTGC 1 cut(s) 644
CaiI CAGNNNCTG 1 cut(s) 708
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 179, 520
Csp6I GTAC 2 cut(s) 84, 633
CviQI GTAC 2 cut(s) 84, 633
DdeI CTNAG 2 cut(s) 46, 293
DpnI GATC 2 cut(s) 351, 371
DpnII GATC 2 cut(s) 349, 369
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 179, 520
Eco57I CTGAAG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaqI GGGAC 1 cut(s) 506
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 157, 489, 545
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 157, 489, 545
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 157, 489, 545
GsuI CTGGAG 2 cut(s) 238, 336
HaeIII GGCC 2 cut(s) 21, 701
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 2 cut(s) 8, 579
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 280, 347
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 2 cut(s) 172, 413
HpyCH4V TGCA 7 cut(s) 118, 239, 375, 512, 547, 560, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 46, 293
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 349, 369
Lsp1109I GCAGC 2 cut(s) 500, 531
LweI GCATC 4 cut(s) 248, 328, 632, 648
MaeI CTAG 1 cut(s) 567
MalI GATC 2 cut(s) 351, 371
MboI GATC 2 cut(s) 349, 369
MboII GAAGA 4 cut(s) 80, 115, 209, 598
MflI RGATCY 1 cut(s) 369
MluCI AATT 3 cut(s) 112, 333, 513
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 5 cut(s) 32, 134, 143, 170, 213
MseI TTAA 2 cut(s) 231, 465
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 349, 369
NlaIV GGNNCC 1 cut(s) 522
NmeAIII GCCGAG 1 cut(s) 21
PfeI GAWTC 1 cut(s) 579
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 158, 490, 546
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 179, 520
PstI CTGCAG 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 708
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 2 cut(s) 85, 634
RsaNI GTAC 2 cut(s) 84, 633
SaqAI TTAA 2 cut(s) 231, 465
SatI GCNGC 3 cut(s) 157, 489, 545
Sau3AI GATC 2 cut(s) 349, 369
Sau96I GGNCC 2 cut(s) 179, 520
SchI GAGTC 1 cut(s) 17
SetI ASST 9 cut(s) 67, 95, 106, 112, 181, 422, 426, 638, 710
SfaNI GCATC 4 cut(s) 248, 328, 632, 648
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 2 cut(s) 179, 520
Sse9I AATT 3 cut(s) 112, 333, 513
SsiI CCGC 3 cut(s) 54, 156, 159
SspI AATATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 172, 413
TaqI TCGA 1 cut(s) 577
TasI AATT 3 cut(s) 112, 333, 513
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 2 cut(s) 231, 465
Tru9I TTAA 2 cut(s) 231, 465
TscAI CASTG 2 cut(s) 319, 445
TseI GCWGC 2 cut(s) 488, 544
TspDTI ATGAA 2 cut(s) 111, 598
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 319, 445
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 179, 520
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 424
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.