Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

28210111 .. 28213968

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1204600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATGAGACCTACGCTGGCCTCGCCACCAGCCATTTGCTCGGCTCAGTCCCTGCTGTTACTGAAAATAAAGAAAAGAGTACCACAAGTTATGAAGCACCTGATGCGAATTTGCAAATCTTCCCGCCAAATATTAATGGAGGAGAGAAGGGGGGCGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAGCAACAACCAGCAAACAACTGGAGGGGAGTATTTAATATCGCATCATACACACAATACTTCAATGTGGATACAGACGTTGTCTTAACAAGATTGCTTAGTTCTTTATATCCCCATACTGGAGATTTTTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAATCTGGATTTCCACTACGTTGGTGTTTGTGCTTGCTGCACTTGGTAACTGTGCCACCTACCTCATGGACAAGCGCACAGATAGCAGTAACTCTTGGGAGTTTAATGTCAGTTATATGAGTTTGGCAGCCTATTCAGTCTACGGTTATGCAATTTTGGTGCCATTGGCATTCTATTTCTTGATACAGTATCTGGGCACTGCAAATGCCAGCCTAGTTCGGTATTGGTGTATGTGGGGATACTCTCTCTTCATTTTCGTTGCAGCCTCTTTTCTGCTGCTTATCCCAGTTGAGGCTCTTCGGTGGATCATTATAGTTCTCATTGGTGGCTACTCTGCTTGCTTTGTTGCCTTCAATCTCAGGTCCAGTATGGAGGGGAGTGATTTTTCACTTGTGGTGGTTGCTGCATTTCTCTTGCAACTGGCCCTGGCAATCTTCTTTAAGGTCTACTTCTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

273

Amino Acids

30.19

Weight (kDa)

4.63

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	100 - 265	1.2e-14	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	2 cut(s)	498, 804
AciI	CCGC	2 cut(s)	125, 156
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	2 cut(s)	82, 178
AfiI	CCNNNNNNNGG	2 cut(s)	311, 649
AgsI	TTSAA	2 cut(s)	256, 712
AjnI	CCWGG	1 cut(s)	783
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	671
AlwNI	CAGNNNCTG	2 cut(s)	53, 550
AoxI	GGCC	2 cut(s)	19, 780
ApeKI	GCWGC	5 cut(s)	395, 485, 620, 634, 761
ApoI	RAATTY	1 cut(s)	109
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	720, 781
AvaII	GGWCC	1 cut(s)	720
BaeGI	GKGCMC	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	1 cut(s)	517
BbvI	GCAGC	5 cut(s)	382, 497, 621, 632, 748
BciT130I	CCWGG	1 cut(s)	785
BciVI	GTATCC	2 cut(s)	256, 590
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	572
BfuI	GTATCC	2 cut(s)	256, 590
BisI	GCNGC	5 cut(s)	396, 486, 621, 635, 762
BlsI	GCNGC	5 cut(s)	397, 487, 622, 636, 763
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	1 cut(s)	720
BmgT120I	GGNCC	2 cut(s)	720, 781
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	785
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	3 cut(s)	94, 245, 325
BmuI	ACTGGG	1 cut(s)	638
BpmI	CTGGAG	2 cut(s)	235, 333
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 649
Bse1I	ACTGG	5 cut(s)	218, 316, 644, 723, 783
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	311, 649
BseMII	CTCAG	2 cut(s)	60, 730
BseNI	ACTGG	5 cut(s)	218, 316, 644, 723, 783
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	5 cut(s)	382, 497, 621, 632, 748
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	21, 782
BshNI	GGYRCC	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	311, 649
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	21, 782
Bso31I	GGTCTC	1 cut(s)	2
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	346, 663
BspACI	CCGC	2 cut(s)	125, 156
BspANI	GGCC	2 cut(s)	21, 782
BspCNI	CTCAG	2 cut(s)	59, 729
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	5 cut(s)	218, 316, 644, 723, 783
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	2 cut(s)	346, 663
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	4 cut(s)	169, 410, 503, 546
Bst6I	CTCTTC	2 cut(s)	611, 660
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	4 cut(s)	19, 393, 568, 697
BstDEI	CTNAG	3 cut(s)	46, 290, 716
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	349, 666
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	346, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 104, 441
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	5 cut(s)	382, 497, 621, 632, 748
BstXI	CCANNNNNNTGG	1 cut(s)	379
BsuI	GTATCC	2 cut(s)	256, 590
BsuRI	GGCC	2 cut(s)	21, 782
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	4 cut(s)	19, 393, 568, 697
CaiI	CAGNNNCTG	2 cut(s)	53, 550
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	720, 781
Csp6I	GTAC	2 cut(s)	81, 177
CviAII	CATG	2 cut(s)	424, 816
CviQI	GTAC	2 cut(s)	81, 177
DdeI	CTNAG	3 cut(s)	46, 290, 716
DpnI	GATC	2 cut(s)	348, 665
DpnII	GATC	2 cut(s)	346, 663
Eam1104I	CTCTTC	2 cut(s)	611, 660
EarI	CTCTTC	2 cut(s)	611, 660
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	720
EcoRII	CCWGG	1 cut(s)	783
FaeI	CATG	2 cut(s)	427, 819
FalI	AAGNNNNNCTT	1 cut(s)	791
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	423, 815
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	2 cut(s)	498, 804
Fnu4HI	GCNGC	5 cut(s)	396, 486, 621, 635, 762
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	396, 486, 621, 635, 762
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	5 cut(s)	396, 486, 621, 635, 762
GsuI	CTGGAG	2 cut(s)	235, 333
HaeIII	GGCC	2 cut(s)	21, 782
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	427, 819
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	499, 805
Hpy188III	TCNNGA	2 cut(s)	364, 538
Hpy8I	GTNNAC	2 cut(s)	499, 805
HpyAV	CCTTC	2 cut(s)	142, 718
HpyCH4III	ACNGT	4 cut(s)	169, 410, 503, 546
HpyCH4IV	ACGT	2 cut(s)	270, 377
HpyCH4V	TGCA	7 cut(s)	115, 398, 509, 560, 620, 764, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 104, 441
HpyF3I	CTNAG	3 cut(s)	46, 290, 716
HpySE526I	ACGT	2 cut(s)	270, 377
Hsp92II	CATG	2 cut(s)	427, 819
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	346, 663
LguI	GCTCTTC	1 cut(s)	660
Lsp1109I	GCAGC	5 cut(s)	382, 497, 621, 632, 748
LweI	GCATC	3 cut(s)	94, 245, 325
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	2 cut(s)	270, 377
MaeIII	GTNAC	3 cut(s)	58, 404, 446
MalI	GATC	2 cut(s)	348, 665
MboI	GATC	2 cut(s)	346, 663
MboII	GAAGA	4 cut(s)	112, 598, 647, 784
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	3 cut(s)	109, 330, 510
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	32, 134, 210, 431, 634, 643, 724
MseI	TTAA	5 cut(s)	135, 228, 278, 462, 798
MspR9I	CCNGG	1 cut(s)	785
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	3 cut(s)	23, 104, 441
NdeII	GATC	2 cut(s)	346, 663
NlaIII	CATG	2 cut(s)	427, 819
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	527
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	397, 487, 622, 636, 763
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	720, 781
PstNI	CAGNNNCTG	2 cut(s)	53, 550
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	82, 178
RsaNI	GTAC	2 cut(s)	81, 177
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	5 cut(s)	135, 228, 278, 462, 798
SatI	GCNGC	5 cut(s)	396, 486, 621, 635, 762
Sau3AI	GATC	2 cut(s)	346, 663
Sau96I	GGNCC	2 cut(s)	720, 781
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	8 cut(s)	14, 103, 273, 380, 419, 423, 722, 804
SfaNI	GCATC	3 cut(s)	94, 245, 325
SinI	GGWCC	1 cut(s)	720
Sse9I	AATT	3 cut(s)	109, 330, 510
SsiI	CCGC	2 cut(s)	125, 156
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	169, 410, 503, 546
TaiI	ACGT	2 cut(s)	273, 380
TasI	AATT	3 cut(s)	109, 330, 510
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	5 cut(s)	135, 228, 278, 462, 798
Tru9I	TTAA	5 cut(s)	135, 228, 278, 462, 798
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	5 cut(s)	395, 485, 620, 634, 761
TspDTI	ATGAA	2 cut(s)	108, 598
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	720
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 421
XmiI	GTMKAC	2 cut(s)	498, 804
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.