Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Forward (+)

46116278 .. 46120051

Gene Structure 3774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGCACTCCGTCACTCGCAGGGGGCATGGGGGCCTTCTCTGGGTTCACTCGGCTATGCAAGGGCTTAGCGGTGGTCCTGATTGGAGGCCACATTGTCGTTCAGCTCCTCCCCGTCGCCGTTACTTACCTCGCCCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCGTAACATCCGGTTACATTGAACAATCAATATTTGGGGTTGTTGTAAGCACTCTTGGTCTTCTTTTTATAGGGAAGCTGCTTGAACCTGTCTGGGGTTCCAGGGAGTTCTTGAAGTTTATCTTTGTAGTTAACTTCCTAACTTCCATATGCATTTTCATCACTGCCATTGCGCTGTACTACATTACAAGGAAGGAAACTTACCTATATATGCCTCTTTCTGGCTTCCATGGAGTTCTTTCAGGTTTTTTGGTTGGCATTAAGCAAATGATACCTGACCAAGAGTTACCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTCTCTCACTACTGCTGTCCATTGCCATCAGCTTCTGGACAGCTGAGTCAGCAACATATCTTCCAATCTTGATATTTGGCACCTATATGAGCTGGATTTACCTTAGATACTGGCAGCGAAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTCTTGAGACCAGTCATTGATCCTGTTGCATCCATATTCCATCGGATGCTTTGTGGAAGATCTGAAGCCTCTAATGAAGCCCAAGGTTATACCGTGGGAGGGACCACATTGCCTGGATCTGACCCCATCGAGGCATCTAGAAGGAGGGAAAGAGGGGCACGAGCTCTGGAAGAAAGACTAGCAGCTGAGAGATTGGGTGCAGCAATGGGTACAGAAGAGCTGGGAAGAGATGCCACAGAGAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

308

Amino Acids

34.09

Weight (kDa)

8.69

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1751	PF08551	48 - 146	1.5e-34	Eukaryotic integral membrane protein (DUF1751)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	538
AccB1I	GGYRCC	1 cut(s)	572
AciI	CCGC	2 cut(s)	71, 144
AclWI	GGATC	3 cut(s)	632, 692, 802
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	350, 889
AfiI	CCNNNNNNNGG	5 cut(s)	42, 266, 392, 777, 808
AgsI	TTSAA	4 cut(s)	194, 257, 286, 469
AjnI	CCWGG	3 cut(s)	146, 272, 790
AluBI	AGCT	9 cut(s)	106, 250, 479, 525, 536, 585, 842, 863, 898
AluI	AGCT	9 cut(s)	106, 250, 479, 525, 536, 585, 842, 863, 898
Alw21I	GWGCWC	2 cut(s)	8, 844
Alw26I	GTCTC	1 cut(s)	679
AlwI	GGATC	3 cut(s)	632, 692, 802
AlwNI	CAGNNNCTG	1 cut(s)	528
AoxI	GGCC	2 cut(s)	33, 88
ApeKI	GCWGC	4 cut(s)	250, 607, 860, 878
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	33, 76, 780
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	2 cut(s)	76, 780
BaeGI	GKGCMC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	844
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BauI	CACGAG	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	8, 844
BbvI	GCAGC	4 cut(s)	237, 619, 872, 890
BccI	CCATC	4 cut(s)	499, 527, 726, 812
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	3 cut(s)	148, 274, 792
BcoDI	GTCTC	1 cut(s)	679
BfaI	CTAG	2 cut(s)	816, 857
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	4 cut(s)	251, 608, 861, 879
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	4 cut(s)	252, 609, 862, 880
Bme1390I	CCNGG	3 cut(s)	148, 274, 792
Bme18I	GGWCC	2 cut(s)	76, 780
BmgT120I	GGNCC	3 cut(s)	33, 76, 780
BmiI	GGNNCC	5 cut(s)	34, 170, 271, 574, 781
BmrFI	CCNGG	3 cut(s)	148, 274, 792
BmsI	GCATC	4 cut(s)	714, 716, 821, 898
BpiI	GAAGAC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	614, 703
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	4 cut(s)	273, 400, 760, 771
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 266, 392, 777, 808
Bse1I	ACTGG	2 cut(s)	608, 689
Bse3DI	GCAATG	4 cut(s)	339, 513, 785, 888
BseBI	CCWGG	3 cut(s)	148, 274, 792
BseDI	CCNNGG	4 cut(s)	273, 400, 760, 771
BseGI	GGATG	3 cut(s)	179, 707, 729
BseLI	CCNNNNNNNGG	5 cut(s)	42, 266, 392, 777, 808
BseMI	GCAATG	4 cut(s)	339, 513, 785, 888
BseMII	CTCAG	2 cut(s)	528, 855
BseNI	ACTGG	2 cut(s)	608, 689
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	4 cut(s)	237, 619, 872, 890
BseYI	CCCAGC	1 cut(s)	898
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	2 cut(s)	35, 90
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	8, 844
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	793
BslI	CCNNNNNNNGG	5 cut(s)	42, 266, 392, 777, 808
BsmAI	GTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	793
BsnI	GGCC	2 cut(s)	35, 90
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	3 cut(s)	8, 838, 844
Bsp143I	GATC	4 cut(s)	637, 697, 737, 794
Bsp1720I	GCTNAGC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	71, 144
BspANI	GGCC	2 cut(s)	35, 90
BspCNI	CTCAG	2 cut(s)	529, 856
BspLI	GGNNCC	5 cut(s)	34, 170, 271, 574, 781
BspPI	GGATC	3 cut(s)	632, 692, 802
BspQI	GCTCTTC	1 cut(s)	888
BspT107I	GGYRCC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	679
BsrDI	GCAATG	4 cut(s)	339, 513, 785, 888
BsrI	ACTGG	2 cut(s)	608, 689
BssECI	CCNNGG	4 cut(s)	273, 400, 760, 771
BssMI	GATC	4 cut(s)	637, 697, 737, 794
BssSI	CACGAG	1 cut(s)	837
BssT1I	CCWWGG	2 cut(s)	400, 760
Bst2BI	CACGAG	1 cut(s)	837
Bst2UI	CCWGG	3 cut(s)	148, 274, 792
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	2 cut(s)	888, 898
BstDEI	CTNAG	5 cut(s)	67, 480, 537, 596, 864
BstDSI	CCRYGG	2 cut(s)	400, 771
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	179, 707, 729
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	4 cut(s)	640, 700, 740, 797
BstMAI	GTCTC	1 cut(s)	679
BstMBI	GATC	4 cut(s)	637, 697, 737, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	3 cut(s)	148, 274, 792
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	146, 272, 790
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	4 cut(s)	237, 619, 872, 890
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	737, 794
BstYI	RGATCY	2 cut(s)	737, 794
BsuRI	GGCC	2 cut(s)	35, 90
BtgI	CCRYGG	2 cut(s)	400, 771
BtsCI	GGATG	3 cut(s)	179, 707, 729
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	528
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	33, 76, 780
Csp6I	GTAC	2 cut(s)	349, 888
CviAII	CATG	2 cut(s)	28, 401
CviQI	GTAC	2 cut(s)	349, 888
DdeI	CTNAG	5 cut(s)	67, 480, 537, 596, 864
DpnI	GATC	4 cut(s)	639, 699, 739, 796
DpnII	GATC	4 cut(s)	637, 697, 737, 794
DrdI	GACNNNNNNGTC	1 cut(s)	538
DseDI	GACNNNNNNGTC	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	888, 898
EarI	CTCTTC	2 cut(s)	888, 898
Ecl136II	GAGCTC	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	400, 760
Eco24I	GRGCYC	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	76, 780
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	762
Eco91I	GGTNACC	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	842
EcoO109I	RGGNCCY	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	146, 272, 790
EcoT14I	CCWWGG	2 cut(s)	400, 760
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	844
ErhI	CCWWGG	2 cut(s)	400, 760
FaeI	CATG	2 cut(s)	31, 404
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	793
FatI	CATG	2 cut(s)	27, 400
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	251, 608, 861, 879
FokI	GGATG	3 cut(s)	166, 694, 736
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	4 cut(s)	251, 608, 861, 879
FspBI	CTAG	2 cut(s)	816, 857
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	4 cut(s)	251, 608, 861, 879
GsaI	CCCAGC	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	35, 90
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	31, 404
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	154, 539
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	48, 304
Hpy188I	TCNGA	3 cut(s)	723, 742, 799
Hpy188III	TCNNGA	8 cut(s)	79, 166, 283, 529, 562, 682, 816, 845
Hpy8I	GTNNAC	2 cut(s)	48, 304
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	46, 358, 813
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4V	TGCA	5 cut(s)	60, 324, 656, 707, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	5 cut(s)	67, 480, 537, 596, 864
Hsp92II	CATG	2 cut(s)	31, 404
HspAI	GCGC	1 cut(s)	344
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	637, 697, 737, 794
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	4 cut(s)	237, 619, 872, 890
LweI	GCATC	4 cut(s)	714, 716, 821, 898
MaeI	CTAG	2 cut(s)	816, 857
MaeIII	GTNAC	6 cut(s)	12, 121, 175, 185, 456, 486
MalI	GATC	4 cut(s)	639, 699, 739, 796
MboI	GATC	4 cut(s)	637, 697, 737, 794
MboII	GAAGA	8 cut(s)	224, 545, 659, 661, 747, 860, 905, 915
MflI	RGATCY	2 cut(s)	737, 794
MhlI	GDGCHC	3 cut(s)	8, 838, 844
MluCI	AATT	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	548
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	2 cut(s)	303, 432
MslI	CAYNNNNRTG	1 cut(s)	578
MspA1I	CMGCKG	2 cut(s)	536, 863
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	148, 274, 792
MvaI	CCWGG	3 cut(s)	148, 274, 792
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	400
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	4 cut(s)	637, 697, 737, 794
NlaIII	CATG	2 cut(s)	31, 404
NlaIV	GGNNCC	5 cut(s)	34, 170, 271, 574, 781
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	888
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	252, 609, 862, 880
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	844
Psp6I	CCWGG	3 cut(s)	146, 272, 790
PspEI	GGTNACC	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	898
PspGI	CCWGG	3 cut(s)	146, 272, 790
PspN4I	GGNNCC	5 cut(s)	34, 170, 271, 574, 781
PspPI	GGNCC	3 cut(s)	33, 76, 780
PstNI	CAGNNNCTG	1 cut(s)	528
PsuI	RGATCY	2 cut(s)	737, 794
PvuII	CAGCTG	2 cut(s)	536, 863
RsaI	GTAC	2 cut(s)	350, 889
RsaNI	GTAC	2 cut(s)	349, 888
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	303, 432
SatI	GCNGC	4 cut(s)	251, 608, 861, 879
Sau3AI	GATC	4 cut(s)	637, 697, 737, 794
Sau96I	GGNCC	3 cut(s)	33, 76, 780
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	148, 274, 792
SduI	GDGCHC	3 cut(s)	8, 838, 844
SfaNI	GCATC	4 cut(s)	714, 716, 821, 898
SinI	GGWCC	2 cut(s)	76, 780
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	629, 682
SmoI	CTYRAG	2 cut(s)	629, 682
Sse9I	AATT	1 cut(s)	677
SsiI	CCGC	2 cut(s)	71, 144
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	2 cut(s)	816, 857
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	3 cut(s)	146, 272, 790
StyI	CCWWGG	2 cut(s)	400, 760
TaaI	ACNGT	1 cut(s)	772
TaqI	TCGA	1 cut(s)	807
TasI	AATT	1 cut(s)	677
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	303, 432
Tru9I	TTAA	2 cut(s)	303, 432
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	4 cut(s)	250, 607, 860, 878
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	319, 768
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	76, 780
XapI	RAATTY	1 cut(s)	677
XbaI	TCTAGA	1 cut(s)	815
XspI	CTAG	2 cut(s)	816, 857
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.