Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

15774464 .. 15778815

Gene Structure 4352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16080.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGCCTAAACTTGGCCCAATCAAACACAAGCCCATCCGCAAAGTGGAAAGCAAAGCAAACGCGCGCAGAGAAACGCGTTAATACCGGCCAGTCGTCTTGTACTCTGTGTTCCTTCCAAATTACGAAAAGCAACGTCTTTTCTGGGACTCGCCTGTCCGACTCAGTTTCAGCTCCCGACTCGAATCCCTCGAACTCGGAATCTCAAGCCCAGCGACTCTCTGAGCCTCAAAACGCGGCGTTTTGGTTTCCGTCTCAAATGGACGAGTCCTACGCTGGCCTCCCCACCAGCCACTTGCTCGGCTCCGTCCCTGCTGTTACTGAAGATAAAGAAAAGGGTACCACAAGTTATGAAGCACCTGAAGCGAATTTGCAAATCTTCCCCCCAAATAATAATCGAGGAGAGAAAGGGGGCGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAGCAACAACCAGCCAACAACTGGAGGGGAGTATTTAATATCGCATCATACACACAATATTTCAATGTGGATACAGACGTCGTCTTAAACAGAATGCTTAGTTCTCTATATCCCCATAATGGAGATTTTTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAGTCTGGATTTCCACTACGTTAGTGTTTGTGCTTGCTGCACTTGGAAACTGTGCCACCTACCTCATGGACAAGCGCACTGATAGCAGTACTGCTTGGGATTTTAATGTCAGTTATATGAATATGGCAGCCTTTTCAGTCTACGGTTATGCAATTTTGGTGCCATTGGCATTCTATTTCTTGATACAGTATATGGGCACCTCAAATGCCAGCCTAGTTCGGTTTTGGTGTATGTGGGGATACTCTCTCTTCATTTTCGTTGCAGCCTCTTTTCTGTTGCTTATCCCAGTTGAGGCTCTTCGGTGGATCATTATACTTCTCGTTGGCGGGACAGAAGGTGTAGAGGAGCTTCTTGTTGAGGTTGGCTTGGGATTTGAAGGACAGGAGGGCAACGGCGTCAGAGGAGGTTCGGAGGCGGCGGTGGGAATGGATTATCTGTGCTGGGTGGATGGCGTGCAGGAATGGAGGGGAAGGGAAATGTGGAAGATGGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

371

Amino Acids

40.81

Weight (kDa)

4.84

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AatII	GACGTC	1 cut(s)	531
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	3 cut(s)	338, 775, 812
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	4 cut(s)	64, 66, 78, 236
AciI	CCGC	6 cut(s)	39, 236, 414, 942, 1031, 1034
AclWI	GGATC	1 cut(s)	929
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	2 cut(s)	342, 381
AcyI	GRCGYC	2 cut(s)	528, 1011
AfaI	GTAC	4 cut(s)	103, 340, 436, 706
AfiI	CCNNNNNNNGG	5 cut(s)	13, 45, 471, 569, 907
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	514, 992
AluBI	AGCT	2 cut(s)	173, 964
AluI	AGCT	2 cut(s)	173, 964
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	929
AoxI	GGCC	4 cut(s)	4, 15, 88, 277
ApeKI	GCWGC	3 cut(s)	653, 743, 878
ApoI	RAATTY	1 cut(s)	367
Asp718I	GGTACC	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	66, 68, 693
AspS9I	GGNCC	2 cut(s)	4, 16
BaeGI	GKGCMC	1 cut(s)	815
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BanI	GGYRCC	3 cut(s)	338, 775, 812
BarI	GAAGNNNNNNTAC	2 cut(s)	948, 980
BbvI	GCAGC	3 cut(s)	640, 755, 890
BccI	CCATC	3 cut(s)	43, 1058, 1096
BceAI	ACGGC	1 cut(s)	1024
BciVI	GTATCC	2 cut(s)	514, 848
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	617, 830
BfuI	GTATCC	2 cut(s)	514, 848
BisI	GCNGC	5 cut(s)	237, 654, 744, 879, 1032
BlsI	GCNGC	5 cut(s)	238, 655, 745, 880, 1033
BmcAI	AGTACT	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	4, 16
BmiI	GGNNCC	4 cut(s)	304, 340, 777, 814
BmrI	ACTGGG	1 cut(s)	896
BmsI	GCATC	2 cut(s)	503, 583
BmuI	ACTGGG	1 cut(s)	896
BpmI	CTGGAG	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	189
BsaHI	GRCGYC	2 cut(s)	528, 1011
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 45, 471, 569, 907
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	91, 476, 902
BseGI	GGATG	2 cut(s)	35, 1069
BseLI	CCNNNNNNNGG	5 cut(s)	13, 45, 471, 569, 907
BseMII	CTCAG	2 cut(s)	177, 213
BseNI	ACTGG	3 cut(s)	91, 476, 902
BsePI	GCGCGC	1 cut(s)	64
BseRI	GAGGAG	3 cut(s)	414, 974, 1032
BseSI	GKGCMC	1 cut(s)	815
BseXI	GCAGC	3 cut(s)	640, 755, 890
BseYI	CCCAGC	2 cut(s)	210, 1056
BsgI	GTGCAG	2 cut(s)	639, 1091
Bsh1236I	CGCG	4 cut(s)	64, 66, 78, 236
BshFI	GGCC	4 cut(s)	6, 17, 90, 279
BshNI	GGYRCC	3 cut(s)	338, 775, 812
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	3 cut(s)	160, 293, 958
BslI	CCNNNNNNNGG	5 cut(s)	13, 45, 471, 569, 907
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	3 cut(s)	160, 293, 958
BsmI	GAATGC	2 cut(s)	549, 785
BsnI	GGCC	4 cut(s)	6, 17, 90, 279
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp143I	GATC	2 cut(s)	604, 921
BspACI	CCGC	6 cut(s)	39, 236, 414, 942, 1031, 1034
BspANI	GGCC	4 cut(s)	6, 17, 90, 279
BspCNI	CTCAG	2 cut(s)	176, 214
BspFNI	CGCG	4 cut(s)	64, 66, 78, 236
BspLI	GGNNCC	4 cut(s)	304, 340, 777, 814
BspPI	GGATC	1 cut(s)	929
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	3 cut(s)	338, 775, 812
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	91, 476, 902
BssAI	RCCGGY	1 cut(s)	86
BssHII	GCGCGC	1 cut(s)	64
BssMI	GATC	2 cut(s)	604, 921
BssNI	GRCGYC	2 cut(s)	528, 1011
Bst4CI	ACNGT	4 cut(s)	427, 668, 761, 804
Bst6I	CTCTTC	2 cut(s)	869, 918
BstACI	GRCGYC	2 cut(s)	528, 1011
BstC8I	GCNNGC	5 cut(s)	66, 277, 651, 826, 1070
BstDEI	CTNAG	3 cut(s)	163, 222, 548
BstF5I	GGATG	2 cut(s)	35, 1069
BstFNI	CGCG	4 cut(s)	64, 66, 78, 236
BstHHI	GCGC	3 cut(s)	66, 68, 693
BstKTI	GATC	2 cut(s)	607, 924
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	604, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 699
BstSLI	GKGCMC	1 cut(s)	815
BstUI	CGCG	4 cut(s)	64, 66, 78, 236
BstV1I	GCAGC	3 cut(s)	640, 755, 890
BsuI	GTATCC	2 cut(s)	514, 848
BsuRI	GGCC	4 cut(s)	6, 17, 90, 279
BtsCI	GGATG	2 cut(s)	35, 1069
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	5 cut(s)	66, 277, 651, 826, 1070
CfoI	GCGC	3 cut(s)	66, 68, 693
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	4, 16
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	4 cut(s)	102, 339, 435, 705
CviAII	CATG	1 cut(s)	682
CviQI	GTAC	4 cut(s)	102, 339, 435, 705
DdeI	CTNAG	3 cut(s)	163, 222, 548
DpnI	GATC	2 cut(s)	606, 923
DpnII	GATC	2 cut(s)	604, 921
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	869, 918
EarI	CTCTTC	2 cut(s)	869, 918
Eco57I	CTGAAG	2 cut(s)	342, 381
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	1 cut(s)	685
FaqI	GGGAC	3 cut(s)	160, 293, 958
FatI	CATG	1 cut(s)	681
FauI	CCCGC	1 cut(s)	935
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	5 cut(s)	237, 654, 744, 879, 1032
FokI	GGATG	2 cut(s)	22, 1076
Fsp4HI	GCNGC	5 cut(s)	237, 654, 744, 879, 1032
FspBI	CTAG	2 cut(s)	617, 830
GlaI	GCGC	3 cut(s)	65, 67, 692
GluI	GCNGC	5 cut(s)	237, 654, 744, 879, 1032
GsaI	CCCAGC	2 cut(s)	214, 1060
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	4 cut(s)	6, 17, 90, 279
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	1000
HhaI	GCGC	3 cut(s)	66, 68, 693
Hin1I	GRCGYC	2 cut(s)	528, 1011
Hin1II	CATG	1 cut(s)	685
Hin6I	GCGC	3 cut(s)	64, 66, 691
HinP1I	GCGC	3 cut(s)	64, 66, 691
HinfI	GANTC	7 cut(s)	148, 161, 179, 184, 200, 216, 266
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	5 cut(s)	160, 199, 223, 1016, 1027
Hpy188III	TCNNGA	3 cut(s)	176, 622, 796
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	124, 944, 986, 1080
HpyCH4III	ACNGT	4 cut(s)	427, 668, 761, 804
HpyCH4IV	ACGT	3 cut(s)	135, 528, 635
HpyCH4V	TGCA	5 cut(s)	373, 656, 767, 878, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 699
HpyF3I	CTNAG	3 cut(s)	163, 222, 548
HpySE526I	ACGT	3 cut(s)	135, 528, 635
Hsp92I	GRCGYC	2 cut(s)	528, 1011
Hsp92II	CATG	1 cut(s)	685
HspAI	GCGC	3 cut(s)	64, 66, 691
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	604, 921
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	3 cut(s)	178, 308, 961
Lsp1109I	GCAGC	3 cut(s)	640, 755, 890
LweI	GCATC	2 cut(s)	503, 583
MaeI	CTAG	2 cut(s)	617, 830
MaeII	ACGT	3 cut(s)	135, 528, 635
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	606, 923
MboI	GATC	2 cut(s)	604, 921
MboII	GAAGA	5 cut(s)	335, 370, 856, 905, 1111
MhlI	GDGCHC	1 cut(s)	815
MluCI	AATT	4 cut(s)	120, 367, 588, 768
MluI	ACGCGT	1 cut(s)	76
MlyI	GAGTC	5 cut(s)	142, 155, 173, 210, 275
MmeI	TCCRAC	2 cut(s)	183, 409
MseI	TTAA	4 cut(s)	81, 486, 536, 720
MspI	CCGG	1 cut(s)	87
Mva1269I	GAATGC	2 cut(s)	549, 785
MvnI	CGCG	4 cut(s)	64, 66, 78, 236
MwoI	GCNNNNNNNGC	2 cut(s)	362, 699
NdeII	GATC	2 cut(s)	604, 921
NlaIII	CATG	1 cut(s)	685
NlaIV	GGNNCC	4 cut(s)	304, 340, 777, 814
NmeAIII	GCCGAG	1 cut(s)	279
PauI	GCGCGC	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PctI	GAATGC	2 cut(s)	549, 785
PfeI	GAWTC	2 cut(s)	184, 200
PflFI	GACNNNGTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	471
PkrI	GCNGC	5 cut(s)	238, 655, 745, 880, 1033
PleI	GAGTC	5 cut(s)	142, 155, 173, 210, 274
PpsI	GAGTC	5 cut(s)	142, 155, 173, 210, 274
PspFI	CCCAGC	2 cut(s)	210, 1056
PspN4I	GGNNCC	4 cut(s)	304, 340, 777, 814
PspPI	GGNCC	2 cut(s)	4, 16
PsrI	GAACNNNNNNTAC	2 cut(s)	94, 126
PsyI	GACNNNGTC	1 cut(s)	530
PteI	GCGCGC	1 cut(s)	64
RsaI	GTAC	4 cut(s)	103, 340, 436, 706
RsaNI	GTAC	4 cut(s)	102, 339, 435, 705
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	81, 486, 536, 720
SatI	GCNGC	5 cut(s)	237, 654, 744, 879, 1032
Sau3AI	GATC	2 cut(s)	604, 921
Sau96I	GGNCC	2 cut(s)	4, 16
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	5 cut(s)	142, 155, 173, 210, 275
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	2 cut(s)	503, 583
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	120, 367, 588, 768
SsiI	CCGC	6 cut(s)	39, 236, 414, 942, 1031, 1034
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	2 cut(s)	617, 830
TaaI	ACNGT	4 cut(s)	427, 668, 761, 804
TaiI	ACGT	3 cut(s)	138, 531, 638
TaqI	TCGA	3 cut(s)	182, 191, 397
TasI	AATT	4 cut(s)	120, 367, 588, 768
TatI	WGTACW	3 cut(s)	101, 434, 704
TauI	GCSGC	2 cut(s)	239, 1034
TfiI	GAWTC	2 cut(s)	184, 200
Tru1I	TTAA	4 cut(s)	81, 486, 536, 720
Tru9I	TTAA	4 cut(s)	81, 486, 536, 720
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	3 cut(s)	653, 743, 878
TspDTI	ATGAA	3 cut(s)	366, 749, 856
TspGWI	ACGGA	2 cut(s)	240, 295
TspRI	CASTG	1 cut(s)	700
Tth111I	GACNNNGTC	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	3 cut(s)	42, 468, 679
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	2 cut(s)	617, 830
ZraI	GACGTC	1 cut(s)	529
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.