Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

4066 .. 7341

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggacgagtcctactccggcctccccaccagccatttactcggctcagttcccgctgttgtaggtgaagataaagacaagagtaccacaagctatgaagcacctgaagctaatttgcaaatcttccccccaaatagtggaggagacagagggcgcggcggttatcaaactgttggaggtccaagtgaaacatttgaagaacaaccagcaaacaactggaggggatatatgggtgcaaaaactagccttgttcgattctggtgtatgtggggatactctctcttcatttttgttgtagcatcttttttgttacttatcccagttgaggctcttcgatggatcattatagttcttgtcggtgctgcatctggttccttcgttgctttgaatctcaagtcttatatggaggggagtgattttacaatagtgttgatcgctgcatttctcttgcaattggctctggcaatcttctttaaggtttacttcttcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

4.89

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	54, 156, 159
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	137, 325
AgsI	TTSAA	2 cut(s)	197, 388
AluBI	AGCT	2 cut(s)	93, 110
AluI	AGCT	2 cut(s)	93, 110
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	362, 437
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	179
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BbvI	GCAGC	2 cut(s)	349, 424
BccI	CCATC	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	157, 363, 438
BlsI	GCNGC	3 cut(s)	158, 364, 439
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	308, 374
BmuI	ACTGGG	1 cut(s)	314
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 325
Bse1I	ACTGG	2 cut(s)	221, 320
BseLI	CCNNNNNNNGG	2 cut(s)	137, 325
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	221, 320
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	349, 424
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	137, 325
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	339, 432
BspACI	CCGC	3 cut(s)	54, 156, 159
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	221, 320
BssMI	GATC	2 cut(s)	339, 432
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	287, 336
BstDEI	CTNAG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	342, 435
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	339, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	349, 424
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	492
CviJI	RGCY	8 cut(s)	21, 33, 45, 93, 110, 246, 329, 458
CviKI_1	RGCY	8 cut(s)	21, 33, 45, 93, 110, 246, 329, 458
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	2 cut(s)	341, 434
DpnII	GATC	2 cut(s)	339, 432
Eam1104I	CTCTTC	2 cut(s)	287, 336
EarI	CTCTTC	2 cut(s)	287, 336
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	1 cut(s)	495
FaiI	YATR	8 cut(s)	96, 228, 230, 266, 347, 402, 404, 493
FalI	AAGNNNNNCTT	1 cut(s)	467
FatI	CATG	1 cut(s)	491
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	157, 363, 438
Fsp4HI	GCNGC	3 cut(s)	157, 363, 438
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	157, 363, 438
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	495
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	8, 255, 388
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	118, 236, 365, 440, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	495
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	339, 432
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	9 cut(s)	31, 43, 117, 202, 219, 244, 333, 354, 446
Lsp1109I	GCAGC	2 cut(s)	349, 424
LweI	GCATC	2 cut(s)	308, 374
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	2 cut(s)	341, 434
MboI	GATC	2 cut(s)	339, 432
MboII	GAAGA	7 cut(s)	80, 115, 209, 274, 323, 460, 478
MfeI	CAATTG	1 cut(s)	452
MluCI	AATT	2 cut(s)	112, 452
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	32, 134, 143, 170, 213, 319, 400
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	339, 432
NlaIII	CATG	1 cut(s)	495
NlaIV	GGNNCC	1 cut(s)	373
NmeAIII	GCCGAG	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	255, 388
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	158, 364, 439
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	3 cut(s)	157, 363, 438
Sau3AI	GATC	2 cut(s)	339, 432
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	17
SetI	ASST	6 cut(s)	67, 95, 106, 112, 181, 480
SfaNI	GCATC	2 cut(s)	308, 374
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	112, 452
SsiI	CCGC	3 cut(s)	54, 156, 159
SspMI	CTAG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	253, 334
TasI	AATT	2 cut(s)	112, 452
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	255, 388
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	2 cut(s)	362, 437
TspDTI	ATGAA	2 cut(s)	111, 274
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.