Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Forward (+)

9239046 .. 9242805

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACGAGTCCTACTCCGGCCTCCCCACCAGCCACTTACTCGGCTCAGTTCCCGCTGTTGTAGGTGAAGATAAAGACAAGAGTACCACAAGCTATGAAGCACCTGAAGCTAATTTGCAAATCTTCCCCCCAAATAGTGGAGGAGACAGAGGGCGCGGCGGTTATCAAACTGTTGGAGGTCCAAGTGAAACATTTGAAGAACAACCAGCAAACAACTGGAGGGGAGTATTTAATGTTGCATCATACACACAATATTTCAATGTGGATACGGACATTGTCTTGAACAGATTACTAAGTTCTTTGTTTCCCCACACTGGAGATTTTTTCAGCAAAATTGATGCCAATCCTGATCTATATGGGCTAATATGGATCTGCACTACATTAGTGTTCGTGCTGACTTCTTTTGGAAACTGTGCCACCTACCTAATGGACAAGCACACTGATACCACTACTTCTTGGGTCTTTAATGTCAGTTATATGAGTTTGGCAGCCTGTTCAGTCTATGGTTATGCAATTTTGGTCCCCTTGGCGTTTTATTTTTTGCTGCAGTATATGGGTGCAAAATCTAGCCTTGTTCAATTTTGGTGTATGTGGGGATACTCTCTCTTCATTTTTGTTGTAGCATCTTTTTTGTTACTTATCCCAGTTGAGGCTCTTCGATGGATCATTATAGTTCTTGTCGGTGCTGCATCTGGTTCCTTCGTTGCTTTGAATCTCAAGTCTTATATGGAGGGGAGTGATTTTACAATAGTGGTGATCGCTGCATTTCTCTTGCAATTGGCTCTGGCAATCTTCTTTAAGGTTTACTTCTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

272

Amino Acids

30.12

Weight (kDa)

4.63

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	101 - 265	1.3e-16	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	54, 156, 159
AclWI	GGATC	2 cut(s)	377, 671
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	3 cut(s)	137, 314, 649
AgsI	TTSAA	5 cut(s)	197, 259, 283, 578, 712
AluBI	AGCT	2 cut(s)	93, 110
AluI	AGCT	2 cut(s)	93, 110
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	377, 671
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	488, 544, 686, 761
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	179, 520
AsuHPI	GGTGA	2 cut(s)	77, 766
AvaII	GGWCC	2 cut(s)	179, 520
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BbvI	GCAGC	4 cut(s)	500, 531, 673, 748
BccI	CCATC	1 cut(s)	654
BciVI	GTATCC	2 cut(s)	259, 590
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	545
BfuI	GTATCC	2 cut(s)	259, 590
BisI	GCNGC	5 cut(s)	157, 489, 545, 687, 762
BlsI	GCNGC	5 cut(s)	158, 490, 546, 688, 763
Bme18I	GGWCC	2 cut(s)	179, 520
BmgT120I	GGNCC	2 cut(s)	179, 520
BmiI	GGNNCC	2 cut(s)	522, 697
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	4 cut(s)	248, 328, 632, 698
BmuI	ACTGGG	1 cut(s)	638
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	238, 336
BpuEI	CTTGAG	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 314, 649
Bse1I	ACTGG	3 cut(s)	221, 319, 644
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	525
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	137, 314, 649
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	221, 319, 644
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	500, 531, 673, 748
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	3 cut(s)	137, 314, 649
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	349, 369, 663, 756
BspACI	CCGC	3 cut(s)	54, 156, 159
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	522, 697
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	2 cut(s)	377, 671
BspQI	GCTCTTC	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	221, 319, 644
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	4 cut(s)	349, 369, 663, 756
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	172, 413
Bst6I	CTCTTC	2 cut(s)	611, 660
BstDEI	CTNAG	2 cut(s)	46, 293
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	352, 372, 666, 759
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	4 cut(s)	349, 369, 663, 756
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	545
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	500, 531, 673, 748
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	2 cut(s)	259, 590
BsuRI	GGCC	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	312, 438
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	179, 520
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	816
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	2 cut(s)	46, 293
DpnI	GATC	4 cut(s)	351, 371, 665, 758
DpnII	GATC	4 cut(s)	349, 369, 663, 756
Eam1104I	CTCTTC	2 cut(s)	611, 660
EarI	CTCTTC	2 cut(s)	611, 660
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	179, 520
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	819
FalI	AAGNNNNNCTT	1 cut(s)	791
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	815
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	157, 489, 545, 687, 762
Fsp4HI	GCNGC	5 cut(s)	157, 489, 545, 687, 762
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	5 cut(s)	157, 489, 545, 687, 762
GsuI	CTGGAG	2 cut(s)	238, 336
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	819
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	8, 712
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	77, 766
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188III	TCNNGA	2 cut(s)	280, 347
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	172, 413
HpyCH4V	TGCA	9 cut(s)	118, 239, 375, 512, 547, 560, 689, 764, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	46, 293
Hsp92II	CATG	1 cut(s)	819
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	349, 369, 663, 756
LguI	GCTCTTC	1 cut(s)	660
Lsp1109I	GCAGC	4 cut(s)	500, 531, 673, 748
LweI	GCATC	4 cut(s)	248, 328, 632, 698
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	4 cut(s)	351, 371, 665, 758
MboI	GATC	4 cut(s)	349, 369, 663, 756
MboII	GAAGA	7 cut(s)	80, 115, 209, 598, 647, 784, 802
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	5 cut(s)	112, 333, 513, 578, 776
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	32, 134, 143, 170, 213, 643, 724
MseI	TTAA	3 cut(s)	231, 465, 798
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	4 cut(s)	349, 369, 663, 756
NlaIII	CATG	1 cut(s)	819
NlaIV	GGNNCC	2 cut(s)	522, 697
NmeAIII	GCCGAG	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	158, 490, 546, 688, 763
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	522, 697
PspPI	GGNCC	2 cut(s)	179, 520
PstI	CTGCAG	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	231, 465, 798
SatI	GCNGC	5 cut(s)	157, 489, 545, 687, 762
Sau3AI	GATC	4 cut(s)	349, 369, 663, 756
Sau96I	GGNCC	2 cut(s)	179, 520
SchI	GAGTC	1 cut(s)	17
SetI	ASST	8 cut(s)	67, 95, 106, 112, 181, 422, 426, 804
SfaNI	GCATC	4 cut(s)	248, 328, 632, 698
SfcI	CTRYAG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	179, 520
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	5 cut(s)	112, 333, 513, 578, 776
SsiI	CCGC	3 cut(s)	54, 156, 159
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	172, 413
TaqI	TCGA	1 cut(s)	658
TasI	AATT	5 cut(s)	112, 333, 513, 578, 776
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	3 cut(s)	231, 465, 798
Tru9I	TTAA	3 cut(s)	231, 465, 798
TscAI	CASTG	2 cut(s)	319, 445
TseI	GCWGC	4 cut(s)	488, 544, 686, 761
TspDTI	ATGAA	2 cut(s)	111, 598
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	319, 445
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	179, 520
XcmI	CCANNNNNNNNNTGG	2 cut(s)	213, 424
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.