Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009035

Physical Location & Seq

Genomic Coordinates Reverse (-)

26047096 .. 26050909

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G240900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGACGAGTCCTACGCTGGCCTCCCTACCAGCCATTTACTCGGCTCAGTCCCTGCTGTCGTAAGTGAAGATAAAGATAAGAATACCACAAGCTATGAAGCACCTGAAGCTAACTTGCAAATCTTCCCCCCAAATAATGGAGGAGAGAAAGGGCGTGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAACAACAACCGGCGAACAACTGGAGAGGAGTATTTAATATTTCATCGTACACACAATACTTCAATGTGGATACAGACGTTGTCTTAAACAGATTGCTTAGTTCTTTATATCCCCATGGTGGAGATTTTTTCAGCAAAATTGATGCAAACCCTGATTTATATGGGCTAATCTGGATCTCCACTACGTTAGTGTTTGTGCTTGCTGCACTTGGAAACTGTGCCACCTACCTCATGGAAAAGCACAGTGATAGCAGTACTTCTTGGGCCTTTAATGTCAGTTACATGAATTTGGCAGCTTTTTCAGTCTACGGTTATGCAATTTTGGTGCCATTGGCATTTTATTTCTTGCTTCACTATCTGGGCTCAAATGCCAGCCTTGTTCGATTTTGGTGTATGTGGGGATACTCTCTCTTCATATTTGTTTTAGCCTCTTTTTTGTTGCTTATCCCGGTTGAGGCTTTTCGGTGGATCATTATAATTCTTGTTGGTGCTGCCTCCTCATGCTTTGTTGCCTTCAATCTCAAGACTTATATCGAAGGGAATGATGTTGTGGTGATCGCCGCATTTCTCTTGCAACTGGCTCTGGCAATCTTCTTTAAGGTCTACTTCTTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0017016 GO:0017137 GO:0019899 GO:0031267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

270

Amino Acids

29.96

Weight (kDa)

4.85

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39805 AT2G39805
fragaria_vesca	FvH4_7g23450
malus_domestica	MD01G1140300.v1.1 MD07G1204600.v1.1
prunus_persica	Prupe.2G240900_v2.0.a1 Prupe.2G240900_v2.0.a1
pyrus_communis	pycom01g16080 pycom07g19120
rosa_chinensis	RchiOBHm_Chr1g0368591
rosa_laevigata	RLG00000027202
rosa_multiflora	Rmu_sc0001791.1_g000001 Rmu_sc0011394.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288420
rosa_rugosa	Rorug01G0343000 Rorug01G0343100 Rorug01G0343100 Rorug01G0343100
rosa_samantha	Rh1AG350300 Rh1BG313600 Rh1CG328200 Rh1DG345000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	517
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	498, 795
AciI	CCGC	1 cut(s)	753
AclWI	GGATC	2 cut(s)	374, 668
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	3 cut(s)	178, 242, 448
AfiI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
AgsI	TTSAA	3 cut(s)	194, 256, 709
AluBI	AGCT	3 cut(s)	93, 110, 488
AluI	AGCT	3 cut(s)	93, 110, 488
AlwI	GGATC	2 cut(s)	374, 668
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	19, 456
ApeKI	GCWGC	3 cut(s)	395, 485, 683
ApoI	RAATTY	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	382, 497, 670
BciVI	GTATCC	2 cut(s)	256, 587
BcnI	CCSGG	1 cut(s)	641
BfuI	GTATCC	2 cut(s)	256, 587
BisI	GCNGC	4 cut(s)	396, 486, 684, 753
BlsI	GCNGC	4 cut(s)	397, 487, 685, 754
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 311, 646
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	218, 774
BseDI	CCNNGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	218, 774
BseRI	GAGGAG	3 cut(s)	156, 234, 679
BseXI	GCAGC	3 cut(s)	382, 497, 670
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	21, 458
BshNI	GGYRCC	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	203, 641
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	137, 311, 646
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	21, 458
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	366, 660, 747
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	1 cut(s)	753
BspANI	GGCC	2 cut(s)	21, 458
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	374, 668
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	218, 774
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	366, 660, 747
BssT1I	CCWWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	169, 410, 437, 503
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	3 cut(s)	19, 393, 565
BstDEI	CTNAG	2 cut(s)	46, 290
BstDSI	CCRYGG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	369, 663, 750
BstMBI	GATC	3 cut(s)	366, 660, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	382, 497, 670
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuI	GTATCC	2 cut(s)	256, 587
BsuRI	GGCC	2 cut(s)	21, 458
BtgI	CCRYGG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	3 cut(s)	19, 393, 565
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	3 cut(s)	177, 241, 447
CviAII	CATG	4 cut(s)	308, 424, 475, 693
CviQI	GTAC	3 cut(s)	177, 241, 447
DdeI	CTNAG	2 cut(s)	46, 290
DpnI	GATC	3 cut(s)	368, 662, 749
DpnII	GATC	3 cut(s)	366, 660, 747
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	311, 427, 478, 696
FalI	AAGNNNNNCTT	1 cut(s)	782
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	4 cut(s)	307, 423, 474, 692
FblI	GTMKAC	2 cut(s)	498, 795
Fnu4HI	GCNGC	4 cut(s)	396, 486, 684, 753
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	4 cut(s)	396, 486, 684, 753
GluI	GCNGC	4 cut(s)	396, 486, 684, 753
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	21, 458
HapII	CCGG	2 cut(s)	203, 641
Hin1II	CATG	4 cut(s)	311, 427, 478, 696
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	203, 641
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	3 cut(s)	243, 499, 796
Hpy188III	TCNNGA	2 cut(s)	364, 715
Hpy8I	GTNNAC	3 cut(s)	243, 499, 796
HpyAV	CCTTC	2 cut(s)	715, 722
HpyCH4III	ACNGT	4 cut(s)	169, 410, 437, 503
HpyCH4IV	ACGT	2 cut(s)	270, 377
HpyCH4V	TGCA	5 cut(s)	118, 338, 398, 509, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	46, 290
HpySE526I	ACGT	2 cut(s)	270, 377
Hsp92II	CATG	4 cut(s)	311, 427, 478, 696
Kzo9I	GATC	3 cut(s)	366, 660, 747
Lsp1109I	GCAGC	3 cut(s)	382, 497, 670
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	2 cut(s)	270, 377
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	368, 662, 749
MboI	GATC	3 cut(s)	366, 660, 747
MboII	GAAGA	4 cut(s)	80, 115, 595, 775
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	4 cut(s)	330, 478, 510, 669
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	32, 134, 212, 431, 631, 640, 697, 700
MseI	TTAA	4 cut(s)	228, 278, 462, 789
MspI	CCGG	2 cut(s)	203, 641
MspR9I	CCNGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	641
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	3 cut(s)	366, 660, 747
NlaIII	CATG	4 cut(s)	311, 427, 478, 696
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	21
PflFI	GACNNNGTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	397, 487, 685, 754
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	3 cut(s)	178, 242, 448
RsaNI	GTAC	3 cut(s)	177, 241, 447
SaqAI	TTAA	4 cut(s)	228, 278, 462, 789
SatI	GCNGC	4 cut(s)	396, 486, 684, 753
Sau3AI	GATC	3 cut(s)	366, 660, 747
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	9 cut(s)	95, 106, 112, 273, 380, 419, 423, 490, 795
SfaNI	GCATC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	4 cut(s)	330, 478, 510, 669
SsiI	CCGC	1 cut(s)	753
SspI	AATATT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	4 cut(s)	169, 410, 437, 503
TaiI	ACGT	2 cut(s)	273, 380
TaqI	TCGA	2 cut(s)	574, 726
TasI	AATT	4 cut(s)	330, 478, 510, 669
TatI	WGTACW	2 cut(s)	176, 446
TauI	GCSGC	1 cut(s)	755
Tru1I	TTAA	4 cut(s)	228, 278, 462, 789
Tru9I	TTAA	4 cut(s)	228, 278, 462, 789
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	3 cut(s)	395, 485, 683
TspDTI	ATGAA	4 cut(s)	111, 225, 491, 595
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	1 cut(s)	442
Tth111I	GACNNNGTC	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	2 cut(s)	498, 795
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.