Rh1DG345000

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009035
Physical Location & Seq
Reverse (-)
56866488 .. 56870533
4046 bp
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UTR
Exon/CDS
Intron
Rh1DG345000.1

Sequence Viewer

Length: 819 bp
ATGGACGAGTCCTACTCCGGCCTCCCCACCAGCCATTTACTCGGCTCAGTTCCCGCTGTTGTAGGTGAAGATAAAGACAAGAGCACCACAAGCTATGAAGCACCTGAAGCTAATTTGCAAATCTTCCCCCCAAATAGTGGAGGAGACAGAGGGCGTGGCGGTTATCAAACTGTTGGAGGGCCAAGTGAAACATTTGAAGAACAACCAGCAAACAACTGGAGGGGAGTATTTAATGTTGCATCATACACACAATATTTCAATGTGGATACGGACATTGTCTTGAACAGATTACTAAGTTCTTTGTTTCCCCACACTGGAGATTTTTTCAGCAAAATTGATGCCAATCCTGATCTATATGGGCTAATATGGATCTGCACTACATTAGTGTTCGTGCTGACTTCTCTTGGAAACTGTGCCACCTACCTAATGGACAAGCACACTGATACCACTACTTCTTGGGTCTTTAATGTCAGTTATATGAGTTTGGCAGCCTGTTCAGTCTATGGTTATGCAATTTTGGTCCCCTTGGCATTTTATTTTTTGCTGCAGTATATGGGTGCAAAAACTAGCCTTGTTCGATTCTGGTGTATGTGGGGATACTCTCTCTTCATTTTTGTTGTAGCATCTTTTTTGTTACTTATCCCAGTTGAGGCTCTTCGATGGATCATTATAGTTCTTGTCGGTGCTGCATCTGGTTCGTTCGTTGCTTTGAATCTCAAGTCTTATATGGAGGGGAGTGATTTTACAATAGTGTTGATCGCTGCATTTCTCTTGCAATTGGCTCTGGCAATCTTCTTTAAGGTTTACTTCTTCCCATGA

Protein Analysis

272

Amino Acids

30.14

Weight (kDa)

4.74

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 101 - 265 1.6e-16 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AciI CCGC 2 cut(s) 54, 159
AclWI GGATC 2 cut(s) 377, 671
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 137, 314, 649
AgsI TTSAA 4 cut(s) 197, 259, 283, 712
AluBI AGCT 2 cut(s) 93, 110
AluI AGCT 2 cut(s) 93, 110
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 377, 671
AoxI GGCC 2 cut(s) 19, 179
ApeKI GCWGC 4 cut(s) 488, 544, 686, 761
AspS9I GGNCC 2 cut(s) 179, 520
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 500, 531, 673, 748
BccI CCATC 1 cut(s) 654
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciVI GTATCC 2 cut(s) 259, 590
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 545
BfuI GTATCC 2 cut(s) 259, 590
BisI GCNGC 4 cut(s) 489, 545, 687, 762
BlsI GCNGC 4 cut(s) 490, 546, 688, 763
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 179, 520
BmiI GGNNCC 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 4 cut(s) 248, 328, 632, 698
BmuI ACTGGG 1 cut(s) 638
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 238, 336
BpuEI CTTGAG 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 314, 649
Bse1I ACTGG 3 cut(s) 221, 319, 644
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 525
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 137, 314, 649
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 221, 319, 644
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 4 cut(s) 500, 531, 673, 748
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 2 cut(s) 21, 181
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 3 cut(s) 137, 314, 649
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 21, 181
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 349, 369, 663, 756
BspACI CCGC 2 cut(s) 54, 159
BspANI GGCC 2 cut(s) 21, 181
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 549
BspPI GGATC 2 cut(s) 377, 671
BspQI GCTCTTC 1 cut(s) 660
BsrI ACTGG 3 cut(s) 221, 319, 644
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 4 cut(s) 349, 369, 663, 756
BssT1I CCWWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 172, 413
Bst6I CTCTTC 2 cut(s) 611, 660
BstDEI CTNAG 2 cut(s) 46, 293
BstKTI GATC 4 cut(s) 352, 372, 666, 759
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 349, 369, 663, 756
BstMWI GCNNNNNNNGC 2 cut(s) 90, 107
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 4 cut(s) 500, 531, 673, 748
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 2 cut(s) 259, 590
BsuRI GGCC 2 cut(s) 21, 181
BtsIMutI CAGTG 2 cut(s) 312, 438
Cfr13I GGNCC 2 cut(s) 179, 520
CviAII CATG 1 cut(s) 816
DdeI CTNAG 2 cut(s) 46, 293
DpnI GATC 4 cut(s) 351, 371, 665, 758
DpnII GATC 4 cut(s) 349, 369, 663, 756
Eam1104I CTCTTC 2 cut(s) 611, 660
EarI CTCTTC 2 cut(s) 611, 660
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 1 cut(s) 819
FalI AAGNNNNNCTT 1 cut(s) 791
FaqI GGGAC 1 cut(s) 506
FatI CATG 1 cut(s) 815
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 489, 545, 687, 762
Fsp4HI GCNGC 4 cut(s) 489, 545, 687, 762
FspBI CTAG 1 cut(s) 567
GluI GCNGC 4 cut(s) 489, 545, 687, 762
GsuI CTGGAG 2 cut(s) 238, 336
HaeIII GGCC 2 cut(s) 21, 181
HapII CCGG 1 cut(s) 18
Hin1II CATG 1 cut(s) 819
HinfI GANTC 3 cut(s) 8, 579, 712
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 805
Hpy188III TCNNGA 2 cut(s) 280, 347
Hpy8I GTNNAC 1 cut(s) 805
HpyCH4III ACNGT 2 cut(s) 172, 413
HpyCH4V TGCA 9 cut(s) 118, 239, 375, 512, 547, 560, 689, 764, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 107
HpyF3I CTNAG 2 cut(s) 46, 293
Hsp92II CATG 1 cut(s) 819
Kzo9I GATC 4 cut(s) 349, 369, 663, 756
LguI GCTCTTC 1 cut(s) 660
Lsp1109I GCAGC 4 cut(s) 500, 531, 673, 748
LweI GCATC 4 cut(s) 248, 328, 632, 698
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 633
MalI GATC 4 cut(s) 351, 371, 665, 758
MboI GATC 4 cut(s) 349, 369, 663, 756
MboII GAAGA 7 cut(s) 80, 115, 209, 598, 647, 784, 802
MfeI CAATTG 1 cut(s) 776
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 4 cut(s) 112, 333, 513, 776
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 7 cut(s) 32, 134, 143, 170, 213, 643, 724
MseI TTAA 3 cut(s) 231, 465, 798
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 776
MwoI GCNNNNNNNGC 2 cut(s) 90, 107
NdeII GATC 4 cut(s) 349, 369, 663, 756
NlaIII CATG 1 cut(s) 819
NlaIV GGNNCC 1 cut(s) 522
NmeAIII GCCGAG 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 660
PfeI GAWTC 2 cut(s) 579, 712
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 4 cut(s) 490, 546, 688, 763
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 179, 520
PstI CTGCAG 1 cut(s) 549
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 231, 465, 798
SatI GCNGC 4 cut(s) 489, 545, 687, 762
Sau3AI GATC 4 cut(s) 349, 369, 663, 756
Sau96I GGNCC 2 cut(s) 179, 520
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 1 cut(s) 86
SetI ASST 7 cut(s) 67, 95, 106, 112, 422, 426, 804
SfaNI GCATC 4 cut(s) 248, 328, 632, 698
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 4 cut(s) 112, 333, 513, 776
SsiI CCGC 2 cut(s) 54, 159
SspI AATATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 172, 413
TaqI TCGA 2 cut(s) 577, 658
TasI AATT 4 cut(s) 112, 333, 513, 776
TfiI GAWTC 2 cut(s) 579, 712
Tru1I TTAA 3 cut(s) 231, 465, 798
Tru9I TTAA 3 cut(s) 231, 465, 798
TscAI CASTG 2 cut(s) 319, 445
TseI GCWGC 4 cut(s) 488, 544, 686, 761
TspDTI ATGAA 2 cut(s) 111, 598
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 319, 445
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 424
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.